Search result

BaseInfo

ncRNA ID	novel_osa_miR3329
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:220851-220901 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1555749;SRR2097779;SRR2098560;SRR2098822;SRR2098823;SRR2099436;SRR2099567;SRR1555751;SRR2099568;SRR2099746;SRR1556011;SRR4407775;SRR4407777;SRR4407779;SRR4407953;SRR4407954;SRR4407955;SRR4407956;SRR4407957;SRR1556016;SRR4407962;SRR1298766;SRR1556018;SRR1556020;SRR1654490;SRR1654491
Length	24
Mature sequence(if miRNA)	28 - GGACUGUAUUUUGUAAAGCGGACC - 51
Stem-loop(if miRNA)	--     G A       A  C   C   GGACU U UUUUGUA AG GGA C   ||||| | ||||||| || ||| U   CCUGG G GGAAUAU UC CCU C UA     G A       A  C   U
Stem-loop sequence	GGACUGUAUUUUGUAAAGCGGACCUCUUCCCCUAUAUAAGGAGGGGUCCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK066571.1	ncRNA:24   CCAGGCGAAAUGUUUUAUGUCAGG   1   |||||||||||||||||||||||| targets:2984   GGUCCGCUUUACAAAAUACAGUCC   3007 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013068K23, full insert sequence	NA	coding protein	psRNATarget
XM_015795853.1	ncRNA:24   CC-AGGCGAAAUGUUUUAUGUCAGG   1   ||-||||=*|||||||||||||||| targets:1125   GGAUCCGUAUUACAAAAUACAGUCC   1149 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107282086 (LOC107282086), transcript variant X3, mRNA	uncharacterized LOC107282086(LOC107282086)	coding protein	psRNATarget