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BaseInfo

ncRNA ID	novel_osa_miR3327
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:35323714-35323908 [-]
Reference genome	IRGSP-1.0
Source	SRR2040388;SRR2040400;SRR3123648;SRR1738227;SRR1738235
Length	22
Mature sequence(if miRNA)	174 - UUAGAAAUAUUAAACGUAGACU - 195
Stem-loop(if miRNA)	---    AAA           G    AUG       AC   C     CCCUAGA      A         AUCUA                C     GU    UUAG   UAUUAAACGUA ACUA   ACAAAAU  AUU CAUAA       UUAAUU GCGAGAUGA     UUGAGCCUAAUUAAUC AUAAU  G    ||||   ||||||||||| ||||   |||||||  ||| |||||       |||||| |||||||||     |||||||||||||||| |||||    AAUC   AUAAUUUGUAU UGAU   UGUUUUG  UAA GUAUU       GAUUAA CGCUCUAUU     AAUUCGGAUUAAUUAG UAUUA  C UUA    -AG           A    GAA       AU   U     UACUCAC      G         -AAAA                A     AU
Stem-loop sequence	UUAGAAAUAUUAAACGUAGACUAAUGACAAAAUACAUUCCAUAACCCUAGAUUAAUUAGCGAGAUGAAUCUAUUGAGCCUAAUUAAUCCAUAAUGUGCUAAUUAUAGAUUAAUUAGGCUUAAAAAAUUAUCUCGCGAAUUAGCACUCAUUUAUGUAAUUAGUUUUGUAAGUAGUAUAUGUUUAAUAGACUAAAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288873.1	ncRNA:22   UCAGAUGCAAAUUAUAAAGAUU   1   ||||||||||||||||||*||| targets:5675   AGUCUACGUUUAAUAUUUAUAA   5696 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090078I24, full insert sequence	NA	coding protein	psRNATarget
AK288868.1	ncRNA:22   UCAGAUGCAAAUUAUAAAGAUU   1   ||||||||||||||||||*||| targets:4814   AGUCUACGUUUAAUAUUUAUAA   4835 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090078E01, full insert sequence	NA	coding protein	psRNATarget
AK067578.1	ncRNA:22   UCAGAUGCAAAUUAUAAAGAUU   1   |||||||||||||||||||*|| targets:1815   AGUCUACGUUUAAUAUUUCAAA   1836 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013110M15, full insert sequence	NA	coding protein	psRNATarget
AK288236.1	ncRNA:22   UCAGAUGCAAAUUAUAAAGAUU   1   |||||||||||||||*|||||| targets:1898   AGUCUACGUUUAAUACUUCUAA   1919 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090013E07, full insert sequence	NA	coding protein	psRNATarget
XM_015767213.1	ncRNA:22   UCAGAUGCAAAUUAUAAAGAUU   1   ||||||||||||||||||*||| targets:1999   AGUCUACGUUUAAUAUUUGUAA   2020 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group beclin-1-like protein (LOC4324394), transcript variant X1, mRNA	beclin-1-like protein(LOC4324394)	coding protein	psRNATarget
XM_015767222.1	ncRNA:22   UCAGAUGCAAAUUAUAAAGAUU   1   ||||||||||||||||||*||| targets:1981   AGUCUACGUUUAAUAUUUGUAA   2002 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group beclin-1-like protein (LOC4324394), transcript variant X2, mRNA	beclin-1-like protein(LOC4324394)	coding protein	psRNATarget
AK101033.1	ncRNA:22   UCAGAUGCAAAUUAUAAAGAUU   1   ||||||||||||||||||*||| targets:1982   AGUCUACGUUUAAUAUUUGUAA   2003 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023150N19, full insert sequence	NA	coding protein	psRNATarget
XM_015794883.1	ncRNA:22   UCAGAUGCAAAUUAUAAAGAUU   1   ||||||||||||||||||*||| targets:150   AGUCUACGUUUAAUAUUUAUAA   171 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107282066 (LOC107282066), mRNA	uncharacterized LOC107282066(LOC107282066)	coding protein	psRNATarget
CT833304.1	ncRNA:22   UCAGAUGCAAAUUAUAAAGAUU   1   ||||||||||||||||||*||| targets:1381   AGUCUACGUUUAAUAUUUAUAA   1402 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN010D02, full insert sequence	NA	coding protein	psRNATarget
AK288737.1	ncRNA:22   UCAGAUGCAAAUUAUAAAGAUU   1   ||||||||*|||||||||*||| targets:1527   AGUCUACGGUUAAUAUUUAUAA   1548 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090063M20, full insert sequence	NA	coding protein	psRNATarget
CT836037.1	ncRNA:22   UCAGAUGCAAAUUAUAAAGAUU   1   **|||||||||||||*|||||| targets:294   UCUCUACGUUUAAUACUUCUAA   315 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN067F22, full insert sequence	NA	coding protein	psRNATarget
CT836034.1	ncRNA:22   UCAGAUGCAAAUUAUAAAGAUU   1   **|||||||||||||*|||||| targets:294   UCUCUACGUUUAAUACUUCUAA   315 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN059O07, full insert sequence	NA	coding protein	psRNATarget
AK100421.1	ncRNA:22   UCAGAUGCAAAUUAUAAAGAUU   1   **||||=|||||||||||*||| targets:1576   CUUCUAUGUUUAAUAUUUAUAA   1597 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023088B04, full insert sequence	NA	coding protein	psRNATarget
AK120728.1	ncRNA:22   UCAGAUGCAAAUUAUAAAGAUU   1   **||||=|||||||||||*||| targets:1548   CUUCUAUGUUUAAUAUUUAUAA   1569 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023003A06, full insert sequence	NA	coding protein	psRNATarget
XM_015793625.1	ncRNA:20   AGAUGCAAAUUAUAAAGAUU   1   *|||||||||||||||*||| targets:1   CCUACGUUUAAUAUUUAUAA   20 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable BRI1 kinase inhibitor 1 (LOC4345817), mRNA	probable BRI1 kinase inhibitor 1(LOC4345817)	coding protein	psRNATarget
XM_015764094.1	ncRNA:22   UCAGAUGCAAAUUAUAAAGAUU   1   **||||*||*|||||||||||| targets:1557   UAUCUAGGUAUAAUAUUUCUAA   1578 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278207 (LOC107278207), mRNA	uncharacterized LOC107278207(LOC107278207)	coding protein	psRNATarget
AK243194.1	ncRNA:22   UCAGAUGCAAAUUAUAAAGAUU   1   =**=||=*|||||||||||||| targets:1048   GCAUUAUAUUUAAUAUUUCUAA   1069 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J100039M21, full insert sequence	NA	coding protein	psRNATarget