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BaseInfo

ncRNA ID	novel_osa_miR3324
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:20646487-20646572 [+]
Reference genome	IRGSP-1.0
Source	SRR2040388;SRR2040395;SRR2040409;SRR2040410;SRR2097778;SRR2097779;SRR2098822;SRR2098823;SRR2099428;SRR1612404
Length	21
Mature sequence(if miRNA)	66 - UUUUUUUCGUUACGAGAUGUA - 86
Stem-loop(if miRNA)	--       C           C   U    CU   AAUA  U U   CAUCUCG AACGAAAAAAA UAA UUGA  CUG    UA G U   ||||||| ||||||||||| ||| ||||  |||    || |   GUAGAGC UUGCUUUUUUU GUU AAUU  GGC    AU C A AU       A           U   U    -U   GUCG  - A
Stem-loop sequence	CAUCUCGCAACGAAAAAAACUAAUUUGACUCUGAAUAUAUGUUAACUAGCUGCGGUUUAAUUUGUUUUUUUUCGUUACGAGAUGUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT833231.1	ncRNA:21   AUGUAGAGCAUUGCUUUUUUU   1   |||||||||*||||||||||| targets:1190   UACAUCUCGCAACGAAAAAAA   1210 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA053D08, full insert sequence	NA	coding protein	psRNATarget
XM_015756961.1	ncRNA:21   AUGUAGAGCAUUGCUUUUUUU   1   |||||||||*||||||||||| targets:1186   UACAUCUCGCAACGAAAAAAA   1206 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4347194 (LOC4347194), mRNA	uncharacterized LOC4347194(LOC4347194)	coding protein	psRNATarget
AK110839.1	ncRNA:21   AUGUAGAGCAUUGCUUUUUUU   1   |||||||||*||||||||||| targets:1188   UACAUCUCGCAACGAAAAAAA   1208 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-172-B04, full insert sequence	NA	coding protein	psRNATarget
XM_015792915.1	ncRNA:21   AUGUAGAGCAUUGCUUUUUUU   1   |||||||||*||||||||||| targets:1900   UACAUCUCGCAACGAAAAAAA   1920 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 89B1 (LOC4345896), transcript variant X1, mRNA	UDP-glycosyltransferase 89B1(LOC4345896)	coding protein	psRNATarget
LQ236483.1	ncRNA:21   AUGUAGAGCAUUGCUUUUUUU   1   ||=||||||*||||||||||| targets:43   UAUAUCUCGCAACGAAAAAAA   63 Target Full Sequence	2.5	Sequence 2478 from Patent EP2985353	NA	coding protein	psRNATarget
HI404353.1	ncRNA:21   AUGUAGAGCAUUGCUUUUUUU   1   ||=||||||*||||||||||| targets:43   UAUAUCUCGCAACGAAAAAAA   63 Target Full Sequence	2.5	Sequence 2478 from Patent EP2074227	NA	coding protein	psRNATarget
JB164814.1	ncRNA:21   AUGUAGAGCAUUGCUUUUUUU   1   ||=||||||*||||||||||| targets:43   UAUAUCUCGCAACGAAAAAAA   63 Target Full Sequence	2.5	Sequence 2478 from Patent EP2559767	NA	coding protein	psRNATarget
CT830751.1	ncRNA:21   AUGUAGAGCAUUGCUUUUUUU   1   |||=|*|*||||||||||||| targets:763   UACGUAUAGUAACGAAAAAAA   783 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN063A07, full insert sequence	NA	coding protein	psRNATarget
XM_015762405.1	ncRNA:21   AUGUAGAGCAUUGCUUUUUUU   1   *|||*||||*||||||||||| targets:767   GACAACUCGCAACGAAAAAAA   787 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group disease resistance RPP13-like protein 4 (LOC4327629), transcript variant X2, mRNA	disease resistance RPP13-like protein 4(LOC4327629)	coding protein	psRNATarget
XM_015762434.1	ncRNA:21   AUGUAGAGCAUUGCUUUUUUU   1   *|||*||||*||||||||||| targets:834   GACAACUCGCAACGAAAAAAA   854 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group disease resistance RPP13-like protein 4 (LOC4327629), transcript variant X6, mRNA	disease resistance RPP13-like protein 4(LOC4327629)	coding protein	psRNATarget