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BaseInfo

ncRNA ID novel_osa_miR3323
Species Oryza sativa
Class miRNA
Genome position Chr1:20273298-20273519 [+]
Reference genome IRGSP-1.0
Source SRR2040388
Length 21
Mature sequence(if miRNA) 202 - CAUCAUACAUUAAAAUAUGGA - 222
Stem-loop(if miRNA) --       G        GC               U -         C             AAAAAAAAUUA     -UUAUCAUU     -UA UG  A     UUUAU   
  CAUAUUU AAUGUAUG  GUCGUUGACUUUUUU C AACGUUUGA CAUUCGUCUUAUU           UGUAA         UAUUU   U  UG CUUGA     CAUC
  ||||||| ||||||||  ||||||||||||||| | ||||||||| |||||||||||||           |||||         |||||   |  || |||||     |||A
  GUAUAAA UUACAUAC  CGGCAACUGAAAAAA G UUGCAAACU GUAAGCAGAAUAA           ACGUU         AUAAA   A  AC GAAUU     GUAA
AG       A        UA               U A         A             GUUUAUAAAAC     UAAAUUUUU     UAC GU  -     -UCUU   
Stem-loop sequence CAUAUUUGAAUGUAUGGCGUCGUUGACUUUUUUUCAACGUUUGACCAUUCGUCUUAUUAAAAAAAAUUAUGUAAUUAUCAUUUAUUUUAUUGUGACUUGAUUUAUCAUCAAAUGUUCUUUAAGCAUGACAUAAAUAUUUUUAAAUUUGCACAAAAUAUUUGAAUAAGACGAAUGAUCAAACGUUAGUAAAAAAGUCAACGGCAUCAUACAUUAAAAUAUGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288290.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  |||=|||||||||||||||||
targets:1581   UCCGUAUUUUAAUGUAUGAUG   1601

1.0 Oryza sativa Japonica Group cDNA, clone: J090019D06, full insert sequence NA coding protein psRNATarget
XM_015781389.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  |||=|||||||=|||||||||
targets:1268   UCCGUAUUUUAGUGUAUGAUG   1288

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X1, mRNA uncharacterized LOC4336685(LOC4336685) coding protein psRNATarget
XM_015781390.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  |||=|||||||=|||||||||
targets:1268   UCCGUAUUUUAGUGUAUGAUG   1288

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X2, mRNA uncharacterized LOC4336685(LOC4336685) coding protein psRNATarget
AB910360.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  |||||||||||||||||||*|
targets:3972   UCCAUAUUUUAAUGUAUGACG   3992

1.5 Oryza sativa Indica Group BPH26 mRNA for Brown planthopper resistance protein, complete cds, cultivar: ADR52 NA coding protein psRNATarget
AK065928.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  |||||||||||||||||||*|
targets:552   UCCAUAUUUUAAUGUAUGACG   572

1.5 Oryza sativa Japonica Group cDNA clone:J013044J03, full insert sequence NA coding protein psRNATarget
XM_015788428.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  |||||||||||||||||||*|
targets:1450   UCCAUAUUUUAAUGUAUGACG   1470

1.5 PREDICTED: Oryza sativa Japonica Group 12-oxophytodienoate reductase 1 (LOC4340490), transcript variant X1, mRNA 12-oxophytodienoate reductase 1(LOC4340490) coding protein psRNATarget
XM_015788430.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  |||||||||||||||||||*|
targets:1308   UCCAUAUUUUAAUGUAUGACG   1328

1.5 PREDICTED: Oryza sativa Japonica Group 12-oxophytodienoate reductase 1 (LOC4340490), transcript variant X3, mRNA 12-oxophytodienoate reductase 1(LOC4340490) coding protein psRNATarget
CT829159.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  |||||||||||||||||||*|
targets:854   UCCAUAUUUUAAUGUAUGACG   874

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN009P22, full insert sequence NA coding protein psRNATarget
AK102359.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  |||||||||||||||||||*|
targets:708   UCCAUAUUUUAAUGUAUGACG   728

1.5 Oryza sativa Japonica Group cDNA clone:J033091I05, full insert sequence NA coding protein psRNATarget
XM_015783480.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  |||||||||||||||||||*|
targets:701   UCCAUAUUUUAAUGUAUGACG   721

1.5 PREDICTED: Oryza sativa Japonica Group pre-rRNA-processing protein ESF2 (LOC4337700), mRNA pre-rRNA-processing protein ESF2(LOC4337700) coding protein psRNATarget
XM_015792276.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  |||=|||||||||||||||*|
targets:4897   UCCGUAUUUUAAUGUAUGACG   4917

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266639 (LOC9266639), transcript variant X2, mRNA uncharacterized LOC9266639(LOC9266639) coding protein psRNATarget
AK103228.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  |=|||||||||||||||||*|
targets:2615   UUCAUAUUUUAAUGUAUGACG   2635

1.5 Oryza sativa Japonica Group cDNA clone:J033123C21, full insert sequence NA coding protein psRNATarget
AK288883.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  |||=|||||||||||||||*|
targets:896   UCCGUAUUUUAAUGUAUGACG   916

2.5 Oryza sativa Japonica Group cDNA, clone: J090079H22, full insert sequence NA coding protein psRNATarget
XM_015772831.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  ||=||||||||||||||||*|
targets:2882   UCUAUAUUUUAAUGUAUGACG   2902

2.5 PREDICTED: Oryza sativa Japonica Group cationic amino acid transporter 1 (LOC4333545), mRNA cationic amino acid transporter 1(LOC4333545) coding protein psRNATarget
CT828227.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  |||=|||||||||||||||*|
targets:1091   UCCGUAUUUUAAUGUAUGACG   1111

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN015L21, full insert sequence NA coding protein psRNATarget
AK105698.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  |=|||||||||||||||||*|
targets:1084   UUCAUAUUUUAAUGUAUGACG   1104

1.5 Oryza sativa Japonica Group cDNA clone:001-201-D03, full insert sequence NA coding protein psRNATarget
XM_015779608.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  |||=|||||||||||||||*|
targets:1992   UCCGUAUUUUAAUGUAUGACG   2012

2.5 PREDICTED: Oryza sativa Japonica Group anthocyanin regulatory R-S protein (LOC4336634), transcript variant X1, mRNA anthocyanin regulatory R-S protein(LOC4336634) coding protein psRNATarget
XM_015779609.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  |||=|||||||||||||||*|
targets:1963   UCCGUAUUUUAAUGUAUGACG   1983

2.5 PREDICTED: Oryza sativa Japonica Group anthocyanin regulatory R-S protein (LOC4336634), transcript variant X2, mRNA anthocyanin regulatory R-S protein(LOC4336634) coding protein psRNATarget
XM_015792275.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  |||=|||||||||||||||*|
targets:617   UCCGUAUUUUAAUGUAUGACG   637

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266639 (LOC9266639), transcript variant X1, mRNA uncharacterized LOC9266639(LOC9266639) coding protein psRNATarget
CT835080.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  |||=|||||||||||||||*|
targets:990   UCCGUAUUUUAAUGUAUGACG   1010

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN071I07, full insert sequence NA coding protein psRNATarget
XM_015790123.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  |||=|||||||||||||||*|
targets:907   UCCGUAUUUUAAUGUAUGACG   927

2.5 PREDICTED: Oryza sativa Japonica Group pathogenesis-related protein PRB1-3-like (LOC107278128), mRNA pathogenesis-related protein PRB1-3-like(LOC107278128) coding protein psRNATarget
XM_015790117.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  |||=|||||||||||||||*|
targets:907   UCCGUAUUUUAAUGUAUGACG   927

2.5 PREDICTED: Oryza sativa Japonica Group pathogenesis-related protein PRB1-3 (LOC4342311), mRNA pathogenesis-related protein PRB1-3(LOC4342311) coding protein psRNATarget
XM_015790118.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  |||=|||||||||||||||*|
targets:907   UCCGUAUUUUAAUGUAUGACG   927

2.5 PREDICTED: Oryza sativa Japonica Group pathogenesis-related protein PRB1-3-like (LOC107278129), mRNA pathogenesis-related protein PRB1-3-like(LOC107278129) coding protein psRNATarget
CT830705.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  |=|||||||||||||||||*|
targets:204   UUCAUAUUUUAAUGUAUGACG   224

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI024N07, full insert sequence NA coding protein psRNATarget
AK060005.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  |||=|||||||||||||||*|
targets:902   UCCGUAUUUUAAUGUAUGACG   922

2.5 Oryza sativa Japonica Group cDNA clone:006-302-B02, full insert sequence NA coding protein psRNATarget
XM_015776315.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  |||=|||||||||||||||*|
targets:688   UCCGUAUUUUAAUGUAUGACG   708

2.5 PREDICTED: Oryza sativa Japonica Group calvin cycle protein CP12-1, chloroplastic (LOC4332603), mRNA calvin cycle protein CP12-1, chloroplastic(LOC4332603) coding protein psRNATarget
AK062469.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  |||=|||||||||||||||*|
targets:606   UCCGUAUUUUAAUGUAUGACG   626

2.5 Oryza sativa Japonica Group cDNA clone:001-103-E06, full insert sequence NA coding protein psRNATarget
AK062758.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  |=|||||||||||||||||**
targets:488   UUCAUAUUUUAAUGUAUGACA   508

2.5 Oryza sativa Japonica Group cDNA clone:001-106-G10, full insert sequence NA coding protein psRNATarget
AK288521.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  |=|=|||||||||||||||*|
targets:47   UUCGUAUUUUAAUGUAUGACG   67

2.5 Oryza sativa Japonica Group cDNA, clone: J090044A07, full insert sequence NA coding protein psRNATarget
XM_015768863.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  |=|=|||||||||||||||*|
targets:41   UUCGUAUUUUAAUGUAUGACG   61

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107279962 (LOC107279962), mRNA uncharacterized LOC107279962(LOC107279962) coding protein psRNATarget
XM_015779878.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  *|=||||||||||||||||*|
targets:165   CCUAUAUUUUAAUGUAUGACG   185

2.5 PREDICTED: Oryza sativa Japonica Group AT-hook motif nuclear-localized protein 9 (LOC4337449), mRNA AT-hook motif nuclear-localized protein 9(LOC4337449) coding protein psRNATarget
XM_015779276.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  *||=|||||||||||||*|||
targets:1934   ACCGUAUUUUAAUGUAUAAUG   1954

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X1, mRNA uncharacterized LOC9266029(LOC9266029) coding protein psRNATarget
XM_015779283.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  *||=|||||||||||||*|||
targets:1927   ACCGUAUUUUAAUGUAUAAUG   1947

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X2, mRNA uncharacterized LOC9266029(LOC9266029) coding protein psRNATarget
XM_015779289.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  *||=|||||||||||||*|||
targets:1736   ACCGUAUUUUAAUGUAUAAUG   1756

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X3, mRNA uncharacterized LOC9266029(LOC9266029) coding protein psRNATarget
XM_015763706.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  *=|||||||||||||||||**
targets:3462   AUCAUAUUUUAAUGUAUGAGU   3482

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4351923 (LOC4351923), mRNA uncharacterized LOC4351923(LOC4351923) coding protein psRNATarget
AK288262.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  |||||*|||||||*|||||||
targets:2025   UCCAUUUUUUAAUAUAUGAUG   2045

2.5 Oryza sativa Japonica Group cDNA, clone: J090016B02, full insert sequence NA coding protein psRNATarget
EU267952.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  *=|||||||||||||||||**
targets:1882   AUCAUAUUUUAAUGUAUGAGU   1902

2.5 Oryza sativa Japonica Group clone KCS097A12 glutathione synthase mRNA, complete cds NA coding protein psRNATarget
AY453405.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  *=|||||||||||||||||**
targets:1556   AUCAUAUUUUAAUGUAUGAGU   1576

2.5 Oryza sativa glutathione synthetase mRNA, complete cds NA coding protein psRNATarget
AK099555.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  *=|||||||||||||||||**
targets:1323   AUCAUAUUUUAAUGUAUGAGU   1343

2.5 Oryza sativa Japonica Group cDNA clone:J013033N23, full insert sequence NA coding protein psRNATarget
XM_015789801.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  *||||||||||||||||*||*
targets:3657   CCCAUAUUUUAAUGUAUCAUA   3677

2.5 PREDICTED: Oryza sativa Japonica Group serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like (LOC107277622), transcript variant X3, mRNA serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like(LOC107277622) coding protein psRNATarget
AK241663.1
ncRNA:21   AGGUAUAAAAUUACAUACUAC   1
  *==||||||||||||||||*|
targets:819   AUUAUAUUUUAAUGUAUGACG   839

2.5 Oryza sativa Japonica Group cDNA, clone: J065191L10, full insert sequence NA coding protein psRNATarget
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