Search result

BaseInfo

ncRNA ID novel_osa_miR3322
Species Oryza sativa
Class miRNA
Genome position Chr11:16446346-16446511 [+]
Reference genome IRGSP-1.0
Source SRR1555747;SRR2098557;SRR1298766;SRR2098822;SRR2098823;SRR2099428;SRR2099436;SRR1555751;SRR2099567;SRR2099568;SRR2099745;SRR2099746;SRR1556011;SRR4407953;SRR1556018;SRR1556020;SRR1654490
Length 24
Mature sequence(if miRNA) 143 - GACGGUCAAACGUUGAACACGGAU - 166
Stem-loop(if miRNA) --  A   C    U   A      CA            UUUUU      ------UU    UU  UAUU     UAGAUG         G
  UC UGU CAAC UUU ACCGUU  UCUUGUUUGAAA     UUAUGA        AAGA  UU    GUUAU      AUAAAAUAU A
  || ||| |||| ||| ||||||  ||||||||||||     ||||||        ||||  ||    |||||      ||||||||| A
  GG ACA GUUG AAA UGGCAG  AGAAUAAAUUUU     AAUACU        UUCU  AA    CAGUG      UAUUUUAUA U
UA  C   A    C   C      AG            --UUU      UUUAUAUU    UU  ---U     ----UG         A
Stem-loop sequence UCAUGUCCAACUUUUAACCGUUCAUCUUGUUUGAAAUUUUUUUAUGAUUAAGAUUUUUAUUGUUAUUAGAUGAUAAAAUAUGAAUAAUAUUUUAUGUGUGACUAAUUUCUUUUAUAUUUUCAUAAUUUUUUUAAAUAAGAGAGACGGUCAAACGUUGAACACGGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK120736.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  ||||||||||||||||||||||||
targets:2673   AUCCGUGUUCAACGUUUGACCGUC   2696

0.0 Oryza sativa Japonica Group cDNA clone:J023003H05, full insert sequence NA coding protein psRNATarget
JB164349.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  *|=||||||=||||||||||||||
targets:12   UUUCGUGUUUAACGUUUGACCGUC   35

1.0 Sequence 2013 from Patent EP2559767 NA coding protein psRNATarget
LQ236018.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  *|=||||||=||||||||||||||
targets:12   UUUCGUGUUUAACGUUUGACCGUC   35

1.0 Sequence 2013 from Patent EP2985353 NA coding protein psRNATarget
HI403888.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  *|=||||||=||||||||||||||
targets:12   UUUCGUGUUUAACGUUUGACCGUC   35

1.0 Sequence 2013 from Patent EP2074227 NA coding protein psRNATarget
CT832631.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  *|||||||*|||||||||||||||
targets:339   UUCCGUGUCCAACGUUUGACCGUC   362

1.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA021A12, full insert sequence NA coding protein psRNATarget
CT832630.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  *|||||||*|||||||||||||||
targets:339   UUCCGUGUCCAACGUUUGACCGUC   362

1.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA020B12, full insert sequence NA coding protein psRNATarget
JB164256.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  *|=|||||||||||||||||=||=
targets:10   UUUCGUGUUCAACGUUUGACUGUU   33

2.5 Sequence 1920 from Patent EP2559767 NA coding protein psRNATarget
LQ235925.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  *|=|||||||||||||||||=||=
targets:10   UUUCGUGUUCAACGUUUGACUGUU   33

2.5 Sequence 1920 from Patent EP2985353 NA coding protein psRNATarget
HI403795.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  *|=|||||||||||||||||=||=
targets:10   UUUCGUGUUCAACGUUUGACUGUU   33

2.5 Sequence 1920 from Patent EP2074227 NA coding protein psRNATarget
AK066541.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  ||==|||*||||||||||||||||
targets:2909   AUUUGUGCUCAACGUUUGACCGUC   2932

1.0 Oryza sativa Japonica Group cDNA clone:J013070E20, full insert sequence NA coding protein psRNATarget
XM_015775992.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  ||==|||*||||||||||||||||
targets:2912   AUUUGUGCUCAACGUUUGACCGUC   2935

1.0 PREDICTED: Oryza sativa Japonica Group CBL-interacting protein kinase 10 (LOC4332786), transcript variant X1, mRNA CBL-interacting protein kinase 10(LOC4332786) coding protein psRNATarget
XM_015775993.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  ||==|||*||||||||||||||||
targets:1958   AUUUGUGCUCAACGUUUGACCGUC   1981

1.0 PREDICTED: Oryza sativa Japonica Group CBL-interacting protein kinase 10 (LOC4332786), transcript variant X2, mRNA CBL-interacting protein kinase 10(LOC4332786) coding protein psRNATarget
CT828824.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  ||==|||*||||||||||||||||
targets:1078   AUUUGUGCUCAACGUUUGACCGUC   1101

1.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109D05, full insert sequence NA coding protein psRNATarget
XM_015772621.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  *|||||||*|||||||||||=|||
targets:403   UUCCGUGUCCAACGUUUGACUGUC   426

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4332894 (LOC4332894), mRNA uncharacterized LOC4332894(LOC4332894) coding protein psRNATarget
CT828091.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  *|||||||*=||||||||||||||
targets:1570   UUCCGUGUCUAACGUUUGACCGUC   1593

2.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128N06, full insert sequence NA coding protein psRNATarget
XM_015771325.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  *|||||||*|||||||||||=|||
targets:1212   CUCCGUGUCCAACGUUUGACUGUC   1235

2.5 PREDICTED: Oryza sativa Japonica Group protein synthesis inhibitor I (LOC4324068), mRNA protein synthesis inhibitor I(LOC4324068) coding protein psRNATarget
AK287584.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  *|||||||*|||||||||||=|||
targets:1189   CUCCGUGUCCAACGUUUGACUGUC   1212

2.5 Oryza sativa Japonica Group cDNA, clone: J065044J10, full insert sequence NA coding protein psRNATarget
AB051108.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  *|||||||*|||||||||||=|||
targets:1184   CUCCGUGUCCAACGUUUGACUGUC   1207

2.5 Oryza sativa RIP2 mRNA for ribosome inactivating protein 2, complete cds NA coding protein psRNATarget
AK120358.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  ||||||||*||||*||||||||||
targets:1062   AUCCGUGUCCAACAUUUGACCGUC   1085

2.5 Oryza sativa Japonica Group cDNA clone:J013067F13, full insert sequence NA coding protein psRNATarget
XM_015770137.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  |||||||**|||||||||||||||
targets:3141   AUCCGUGCCCAACGUUUGACCGUC   3164

2.0 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase At4g36180 (LOC9268112), mRNA probable LRR receptor-like serine/threonine-protein kinase At4g36180(LOC9268112) coding protein psRNATarget
AK064197.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  ||=|||||*=|||||||||||||=
targets:890   AUUCGUGUCUAACGUUUGACCGUU   913

3.0 Oryza sativa Japonica Group cDNA clone:002-104-D06, full insert sequence NA coding protein psRNATarget
XM_015776704.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  **||||||*=||||||||||||||
targets:1597   UGCCGUGUCUAACGUUUGACCGUC   1620

2.0 PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X1, mRNA glucan endo-1,3-beta-glucosidase 7(LOC4332132) coding protein psRNATarget
XM_015776705.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  **||||||*=||||||||||||||
targets:1591   UGCCGUGUCUAACGUUUGACCGUC   1614

2.0 PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X2, mRNA glucan endo-1,3-beta-glucosidase 7(LOC4332132) coding protein psRNATarget
XM_015776706.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  **||||||*=||||||||||||||
targets:1585   UGCCGUGUCUAACGUUUGACCGUC   1608

2.0 PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X3, mRNA glucan endo-1,3-beta-glucosidase 7(LOC4332132) coding protein psRNATarget
AK242028.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  **||||||*=||||||||||||||
targets:1474   UGCCGUGUCUAACGUUUGACCGUC   1497

2.0 Oryza sativa Japonica Group cDNA, clone: J075115C11, full insert sequence NA coding protein psRNATarget
AK288529.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  *|||||||*||||||||||||*||
targets:71   UUCCGUGUCCAACGUUUGACCAUC   94

2.5 Oryza sativa Japonica Group cDNA, clone: J090044M17, full insert sequence NA coding protein psRNATarget
XM_015792475.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  *|||||||*||||||||||||*||
targets:2605   UUCCGUGUCCAACGUUUGACCAUC   2628

2.5 PREDICTED: Oryza sativa Japonica Group hydrophobic protein LTI6A (LOC4344028), transcript variant X4, mRNA hydrophobic protein LTI6A(LOC4344028) coding protein psRNATarget
XM_015792473.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  *|||||||*||||||||||||*||
targets:2591   UUCCGUGUCCAACGUUUGACCAUC   2614

2.5 PREDICTED: Oryza sativa Japonica Group hydrophobic protein LTI6A (LOC4344028), transcript variant X2, mRNA hydrophobic protein LTI6A(LOC4344028) coding protein psRNATarget
AK070212.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  *|||*|||*|||||||||||||||
targets:1280   UUCCAUGUCCAACGUUUGACCGUC   1303

1.0 Oryza sativa Japonica Group cDNA clone:J023044F01, full insert sequence NA coding protein psRNATarget
AK106724.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  *|||||||*||||*||||||||||
targets:666   UUCCGUGUCCAACAUUUGACCGUC   689

2.5 Oryza sativa Japonica Group cDNA clone:002-114-G11, full insert sequence NA coding protein psRNATarget
CT827991.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  *|||||||*||||*||||||||||
targets:653   UUCCGUGUCCAACAUUUGACCGUC   676

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128H03, full insert sequence NA coding protein psRNATarget
AK242553.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  *||||||**|||||||||||||||
targets:179   UUCCGUGCCCAACGUUUGACCGUC   202

2.0 Oryza sativa Japonica Group cDNA, clone: J080319L22, full insert sequence NA coding protein psRNATarget
AK288230.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  ||=|**|||||||||||||||||=
targets:5278   AUUCACGUUCAACGUUUGACCGUU   5301

2.0 Oryza sativa Japonica Group cDNA, clone: J090012M14, full insert sequence NA coding protein psRNATarget
AK109598.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  |*||||||*|=||||||||||||=
targets:1654   AACCGUGUCCGACGUUUGACCGUU   1677

3.0 Oryza sativa Japonica Group cDNA clone:002-137-D09, full insert sequence NA coding protein psRNATarget
AK108063.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  *|=||||**|||||||||||||||
targets:1346   UUUCGUGCCCAACGUUUGACCGUC   1369

2.0 Oryza sativa Japonica Group cDNA clone:002-138-B04, full insert sequence NA coding protein psRNATarget
AK288670.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  ||=|**|||=|||||||||||||=
targets:928   AUUCACGUUUAACGUUUGACCGUU   951

3.0 Oryza sativa Japonica Group cDNA, clone: J090058O04, full insert sequence NA coding protein psRNATarget
XM_015768707.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  =|=|*|||*||||||||||||||=
targets:1228   GUUCAUGUCCAACGUUUGACCGUU   1251

2.0 PREDICTED: Oryza sativa Japonica Group cysteine-rich repeat secretory protein 15-like (LOC107279942), transcript variant X3, mRNA cysteine-rich repeat secretory protein 15-like(LOC107279942) coding protein psRNATarget
XM_015768705.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  =|=|*|||*||||||||||||||=
targets:1228   GUUCAUGUCCAACGUUUGACCGUU   1251

2.0 PREDICTED: Oryza sativa Japonica Group cysteine-rich repeat secretory protein 15-like (LOC107279942), transcript variant X1, mRNA cysteine-rich repeat secretory protein 15-like(LOC107279942) coding protein psRNATarget
XM_015768708.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  =|=|*|||*||||||||||||||=
targets:1228   GUUCAUGUCCAACGUUUGACCGUU   1251

2.0 PREDICTED: Oryza sativa Japonica Group cysteine-rich repeat secretory protein 15-like (LOC107279942), transcript variant X4, mRNA cysteine-rich repeat secretory protein 15-like(LOC107279942) coding protein psRNATarget
XM_015768706.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  =|=|*|||*||||||||||||||=
targets:1228   GUUCAUGUCCAACGUUUGACCGUU   1251

2.0 PREDICTED: Oryza sativa Japonica Group cysteine-rich repeat secretory protein 15-like (LOC107279942), transcript variant X2, mRNA cysteine-rich repeat secretory protein 15-like(LOC107279942) coding protein psRNATarget
AK289036.1
ncRNA:24   UAGGCACAAGUUGCAAACUGGCAG   1
  |||=|*|**|||||||||||||||
targets:974   AUCUGAGCCCAACGUUUGACCGUC   997

3.0 Oryza sativa Japonica Group cDNA, clone: J090091J22, full insert sequence NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.