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BaseInfo

ncRNA ID novel_osa_miR3321
Species Oryza sativa
Class miRNA
Genome position Chr12:18977480-18977607 [-]
Reference genome IRGSP-1.0
Source SRR2040388
Length 24
Mature sequence(if miRNA) 1 - AUGUGAACAAUGCUAGAAAGUCUU - 24
Stem-loop(if miRNA) --                                GU                      CUGCCUA
  GACUUUCUAGCAUUGUUCACAUUCAUAUAUAU  UAAUGAAUCUAGACAUAUAUGU       G
  ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
  CUGAAAGAUCGUAACAAGUGUAAGUAUAUAUA  AUUACUUAGAUCUGUAUAUACA       A
UU                                --                      AUAACUU
Stem-loop sequence GACUUUCUAGCAUUGUUCACAUUCAUAUAUAUGUUAAUGAAUCUAGACAUAUAUGUCUGCCUAGAUUCAAUAACAUAUAUGUCUAGAUUCAUUAAUAUAUAUGAAUGUGAACAAUGCUAGAAAGUCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015767465.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  |||||||||||||||||||||=||
targets:2511   AAGACUUUCUAGCAUUGUUCAUAU   2534

1.5 PREDICTED: Oryza sativa Japonica Group ATP-dependent DNA helicase Q-like 3 (LOC4330923), transcript variant X2, mRNA ATP-dependent DNA helicase Q-like 3(LOC4330923) coding protein psRNATarget
XM_015767464.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  |||||||||||||||||||||=||
targets:2515   AAGACUUUCUAGCAUUGUUCAUAU   2538

1.5 PREDICTED: Oryza sativa Japonica Group ATP-dependent DNA helicase Q-like 3 (LOC4330923), transcript variant X1, mRNA ATP-dependent DNA helicase Q-like 3(LOC4330923) coding protein psRNATarget
XM_015775405.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  ||||=||||||||||||||||=||
targets:3331   AAGAUUUUCUAGCAUUGUUCAUAU   3354

1.5 PREDICTED: Oryza sativa Japonica Group protein NETWORKED 1A (LOC4331702), transcript variant X2, mRNA protein NETWORKED 1A(LOC4331702) coding protein psRNATarget
XM_015775404.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  ||||=||||||||||||||||=||
targets:3331   AAGAUUUUCUAGCAUUGUUCAUAU   3354

1.5 PREDICTED: Oryza sativa Japonica Group protein NETWORKED 1A (LOC4331702), transcript variant X1, mRNA protein NETWORKED 1A(LOC4331702) coding protein psRNATarget
CT836499.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  |||||||||||||||||*||||||
targets:473   AAGACUUUCUAGCAUUGCUCACAU   496

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA014C07, full insert sequence NA coding protein psRNATarget
CT835628.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  ||||||||||||||||||*|||||
targets:1166   AAGACUUUCUAGCAUUGUCCACAU   1189

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA042P11, full insert sequence NA coding protein psRNATarget
XM_015768357.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  ||||||||||||||||||*|||||
targets:1544   AAGACUUUCUAGCAUUGUCCACAU   1567

1.5 PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X6, mRNA protein SRG1(LOC4329022) coding protein psRNATarget
XM_015768354.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  ||||||||||||||||||*|||||
targets:1580   AAGACUUUCUAGCAUUGUCCACAU   1603

1.5 PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X3, mRNA protein SRG1(LOC4329022) coding protein psRNATarget
XM_015768355.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  ||||||||||||||||||*|||||
targets:1594   AAGACUUUCUAGCAUUGUCCACAU   1617

1.5 PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X4, mRNA protein SRG1(LOC4329022) coding protein psRNATarget
AK065581.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  ||||||||||||||||||*|||||
targets:1600   AAGACUUUCUAGCAUUGUCCACAU   1623

1.5 Oryza sativa Japonica Group cDNA clone:J013034J09, full insert sequence NA coding protein psRNATarget
XM_015768356.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  ||||||||||||||||||*|||||
targets:1628   AAGACUUUCUAGCAUUGUCCACAU   1651

1.5 PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X5, mRNA protein SRG1(LOC4329022) coding protein psRNATarget
XM_015768352.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  ||||||||||||||||||*|||||
targets:1638   AAGACUUUCUAGCAUUGUCCACAU   1661

1.5 PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X1, mRNA protein SRG1(LOC4329022) coding protein psRNATarget
XM_015768353.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  ||||||||||||||||||*|||||
targets:1650   AAGACUUUCUAGCAUUGUCCACAU   1673

1.5 PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X2, mRNA protein SRG1(LOC4329022) coding protein psRNATarget
XM_015764678.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  ||||||||||||||||||*|||||
targets:1602   AAGACUUUCUAGCAUUGUCCACAU   1625

1.5 PREDICTED: Oryza sativa Japonica Group mannan endo-1,4-beta-mannosidase 8 (LOC9271116), mRNA mannan endo-1,4-beta-mannosidase 8(LOC9271116) coding protein psRNATarget
AK073522.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  ||||||||||||||||||*|||||
targets:2486   AAGACUUUCUAGCAUUGUCCACAU   2509

1.5 Oryza sativa Japonica Group cDNA clone:J033046G09, full insert sequence NA coding protein psRNATarget
XM_015767218.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  ||||||||||||||||||*|||||
targets:3697   AAGACUUUCUAGCAUUGUCCACAU   3720

1.5 PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X7, mRNA putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106) coding protein psRNATarget
XM_015767215.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  ||||||||||||||||||*|||||
targets:3793   AAGACUUUCUAGCAUUGUCCACAU   3816

1.5 PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X4, mRNA putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106) coding protein psRNATarget
XM_015767217.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  ||||||||||||||||||*|||||
targets:3852   AAGACUUUCUAGCAUUGUCCACAU   3875

1.5 PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X6, mRNA putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106) coding protein psRNATarget
XM_015767212.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  ||||||||||||||||||*|||||
targets:3919   AAGACUUUCUAGCAUUGUCCACAU   3942

1.5 PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X2, mRNA putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106) coding protein psRNATarget
XM_015767214.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  ||||||||||||||||||*|||||
targets:3948   AAGACUUUCUAGCAUUGUCCACAU   3971

1.5 PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X3, mRNA putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106) coding protein psRNATarget
XM_015767211.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  ||||||||||||||||||*|||||
targets:4015   AAGACUUUCUAGCAUUGUCCACAU   4038

1.5 PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X1, mRNA putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106) coding protein psRNATarget
AK288472.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  ||||||||=|||||||||*|||||
targets:1412   AAGACUUUUUAGCAUUGUGCACAU   1435

2.5 Oryza sativa Japonica Group cDNA, clone: J090037K20, full insert sequence NA coding protein psRNATarget
AF044260.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  ||||||||||||||||||*||||*
targets:2050   AAGACUUUCUAGCAUUGUCCACAA   2073

2.5 Oryza sativa (japonica cultivar-group) clone OsRLK8 receptor serine/threonine kinase mRNA, complete cds NA coding protein psRNATarget
LQ236076.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  |||||||*||||||||||*|||||
targets:9   AAGACUUCCUAGCAUUGUCCACAU   32

2.5 Sequence 2071 from Patent EP2985353 NA coding protein psRNATarget
JB164407.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  |||||||*||||||||||*|||||
targets:9   AAGACUUCCUAGCAUUGUCCACAU   32

2.5 Sequence 2071 from Patent EP2559767 NA coding protein psRNATarget
HI403946.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  |||||||*||||||||||*|||||
targets:9   AAGACUUCCUAGCAUUGUCCACAU   32

2.5 Sequence 2071 from Patent EP2074227 NA coding protein psRNATarget
XM_015790894.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  ||*|||||||||||||||*|||||
targets:552   AACACUUUCUAGCAUUGUCCACAU   575

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107276821 (LOC107276821), mRNA uncharacterized LOC107276821(LOC107276821) coding protein psRNATarget
XM_015755199.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  |||*||||||||||||||*|||||
targets:1076   AAGUCUUUCUAGCAUUGUCCACAU   1099

1.5 PREDICTED: Oryza sativa Japonica Group cinnamoyl-CoA reductase 1 (LOC9270429), transcript variant X1, mRNA cinnamoyl-CoA reductase 1(LOC9270429) coding protein psRNATarget
XM_015755201.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  |||*||||||||||||||*|||||
targets:1079   AAGUCUUUCUAGCAUUGUCCACAU   1102

1.5 PREDICTED: Oryza sativa Japonica Group cinnamoyl-CoA reductase 1 (LOC9270429), transcript variant X2, mRNA cinnamoyl-CoA reductase 1(LOC9270429) coding protein psRNATarget
XM_015774474.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  ||*|||||||||||||||*|||||
targets:1518   AAAACUUUCUAGCAUUGUCCACAU   1541

1.5 PREDICTED: Oryza sativa Japonica Group DIMBOA UDP-glucosyltransferase BX8 (LOC4334628), mRNA DIMBOA UDP-glucosyltransferase BX8(LOC4334628) coding protein psRNATarget
AK288568.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  ||*|||||||||||||||*|||||
targets:1381   AAAACUUUCUAGCAUUGUCCACAU   1404

1.5 Oryza sativa Japonica Group cDNA, clone: J090048B06, full insert sequence NA coding protein psRNATarget
AK066822.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  ||*|=|||*||||||||||||=||
targets:483   AAAAUUUUAUAGCAUUGUUCAUAU   506

2.5 Oryza sativa Japonica Group cDNA clone:J013077F20, full insert sequence NA coding protein psRNATarget
XM_015794006.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  ||*|=|||*||||||||||||=||
targets:1170   AAAAUUUUAUAGCAUUGUUCAUAU   1193

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g15970 (LOC4346122), transcript variant X5, mRNA uncharacterized protein At4g15970(LOC4346122) coding protein psRNATarget
XM_015794003.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  ||*|=|||*||||||||||||=||
targets:1245   AAAAUUUUAUAGCAUUGUUCAUAU   1268

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g15970 (LOC4346122), transcript variant X2, mRNA uncharacterized protein At4g15970(LOC4346122) coding protein psRNATarget
XM_015794005.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  ||*|=|||*||||||||||||=||
targets:1290   AAAAUUUUAUAGCAUUGUUCAUAU   1313

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g15970 (LOC4346122), transcript variant X4, mRNA uncharacterized protein At4g15970(LOC4346122) coding protein psRNATarget
XM_015794002.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  ||*|=|||*||||||||||||=||
targets:1302   AAAAUUUUAUAGCAUUGUUCAUAU   1325

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g15970 (LOC4346122), transcript variant X1, mRNA uncharacterized protein At4g15970(LOC4346122) coding protein psRNATarget
XM_015794004.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  ||*|=|||*||||||||||||=||
targets:1318   AAAAUUUUAUAGCAUUGUUCAUAU   1341

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g15970 (LOC4346122), transcript variant X3, mRNA uncharacterized protein At4g15970(LOC4346122) coding protein psRNATarget
AK070352.1
ncRNA:24   UUCUGAAAGAUCGUAACAAGUGUA   1
  |||*|*||||||||||*|||||||
targets:417   AAGUCAUUCUAGCAUUUUUCACAU   440

2.5 Oryza sativa Japonica Group cDNA clone:J023051F10, full insert sequence NA coding protein psRNATarget
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