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BaseInfo

ncRNA ID	novel_osa_miR3320
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:28768462-28768631 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1556020
Length	24
Mature sequence(if miRNA)	147 - AAAAAUUAAUUUCAUAACUCGUCU - 170
Stem-loop(if miRNA)	--           U     CUC  C      CC    A        A  A  A       A     C      ACA       UAU   AAAAAUUAAUU CAUAA   GU UGGAAA  GUGA ACGAAUUU UU AG CUAAUUG UCCGU AUUAGU   UGUGGGU   U   ||||||||||| |||||   || ||||||  |||| |||||||| || || ||||||| ||||| ||||||   |||||||   G   UUUUUGAUUAA GUGUU   CG ACCUUU  CGCU UGCUUAAA AA UC GAUUAAU AGGUA UAAUCG   AUAUUCA   U UU           C     AAA  U      AA    C        A  C  G       C     U      ---       CGA
Stem-loop sequence	AAAAAUUAAUUUCAUAACUCGUCUGGAAACCGUGAAACGAAUUUAUUAAGACUAAUUGAUCCGUCAUUAGUACAUGUGGGUUAUUGUAGCACUUAUAGCUAAUUAUGGACUAAUUAGGCUCAAAAAAUUCGUCUCGCAAUUUCCAUGCAAAUUGUGCAAUUAGUUUUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288192.1	ncRNA:24   UCUGCUCAAUACUUUAAUUAAAAA   1   ||||||||||||||||||=||||| targets:2292   AGACGAGUUAUGAAAUUAGUUUUU   2315 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090007C12, full insert sequence	NA	coding protein	psRNATarget
AK064090.1	ncRNA:24   UCUGCUCAAUACUUUAAUUAAAAA   1   ||=|||||||||||||||=||||| targets:1369   AGGCGAGUUAUGAAAUUAGUUUUU   1392 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-100-D06, full insert sequence	NA	coding protein	psRNATarget
XM_015775655.1	ncRNA:24   UCUGCUCAAUACUUUAAUUAAAAA   1   ||=|||||||||||||||=||||| targets:1967   AGGCGAGUUAUGAAAUUAGUUUUU   1990 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group 4-hydroxyphenylacetaldehyde oxime monooxygenase (LOC4334792), mRNA	4-hydroxyphenylacetaldehyde oxime monooxygenase(LOC4334792)	coding protein	psRNATarget
AK072891.1	ncRNA:24   UCUGCUCAAUACUUUAAUUAAAAA   1   ||=|||||||||||||||=||||| targets:983   AGGCGAGUUAUGAAAUUAGUUUUU   1006 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023147C03, full insert sequence	NA	coding protein	psRNATarget
AK063539.1	ncRNA:24   UCUGCUCAAUACUUUAAUUAAAAA   1   =|=|||||||||||||||=||||| targets:2132   GGGCGAGUUAUGAAAUUAGUUUUU   2155 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-117-C04, full insert sequence	NA	coding protein	psRNATarget
AK288305.1	ncRNA:24   UCUGCUCAAUACUUUAAUUAAAAA   1   ||==||||||||||||||=||||| targets:2482   AGGUGAGUUAUGAAAUUAGUUUUU   2505 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090020F20, full insert sequence	NA	coding protein	psRNATarget
XM_015782675.1	ncRNA:24   UCUGCUCAAUACUUUAAUUAAAAA   1   ||=||||||*|||||||||||||| targets:13   AGGCGAGUUCUGAAAUUAAUUUUU   36 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group E3 ubiquitin-protein ligase ATL41 (LOC9269942), mRNA	E3 ubiquitin-protein ligase ATL41(LOC9269942)	coding protein	psRNATarget
CT837735.1	ncRNA:24   UCUGCUCAAUACUUUAAUUAAAAA   1   ||=|*|||||||||||||=||||| targets:409   AGGCUAGUUAUGAAAUUAGUUUUU   432 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA009K07, full insert sequence	NA	coding protein	psRNATarget
CT831729.1	ncRNA:24   UCUGCUCAAUACUUUAAUUAAAAA   1   ||=|*|||||||||||||=||||| targets:484   AGGCAAGUUAUGAAAUUAGUUUUU   507 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA117A02, full insert sequence	NA	coding protein	psRNATarget
AK071825.1	ncRNA:24   UCUGCUCAAUACUUUAAUUAAAAA   1   ||-|||||||||||||||=||||| targets:1428   AG-CGAGUUAUGAAAUUAGUUUUU   1450 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023115H13, full insert sequence	NA	coding protein	psRNATarget
AK288167.1	ncRNA:24   UCUGCUCAAUACUUUAAUUAAAAA   1   ||=||||||*||||||||=||||| targets:1279   AGGCGAGUUCUGAAAUUAGUUUUU   1302 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090002K22, full insert sequence	NA	coding protein	psRNATarget
AK121199.1	ncRNA:24   UCUGCUCAAUACUUUAAUUAAAAA   1   |*=|||||||||||||||=||||| targets:1497   AUGCGAGUUAUGAAAUUAGUUUUU   1520 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023087G06, full insert sequence	NA	coding protein	psRNATarget