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BaseInfo

ncRNA ID	novel_osa_miR3317
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:29065585-29065689 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1556020
Length	24
Mature sequence(if miRNA)	1 - AUAUGAGCAAUGGUAGAAAGUCUU - 24
Stem-loop(if miRNA)	-- U       G         C   C        G            G    A   G CUUUCUA CAUUGCUCA AUU AUAUGGAU UUAAUGAAUCUA AUAU U   | ||||||| ||||||||| ||| |||||||| |||||||||||| ||||   C GAAAGAU GUAACGAGU UAA UAUAUCUA AAUUAUUUAGAU UGUA G UU U       G         A   A        -            A    U
Stem-loop sequence	GUCUUUCUAGCAUUGCUCACAUUCAUAUGGAUGUUAAUGAAUCUAGAUAUAUGUAUGUAUAGAUUUAUUAAAUCUAUAUAAAUAUGAGCAAUGGUAGAAAGUCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK108630.1	ncRNA:24   UUCUGAAAGAUGGUAACGAGUAUA   1   |||||||||||*|||||||||||| targets:1594   AAGACUUUCUAGCAUUGCUCAUAU   1617 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-147-F01, full insert sequence	NA	coding protein	psRNATarget
XM_015763482.1	ncRNA:24   UUCUGAAAGAUGGUAACGAGUAUA   1   |||||||||||*|||||||||||| targets:1628   AAGACUUUCUAGCAUUGCUCAUAU   1651 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4352431 (LOC4352431), mRNA	uncharacterized LOC4352431(LOC4352431)	coding protein	psRNATarget
CT831361.1	ncRNA:24   UUCUGAAAGAUGGUAACGAGUAUA   1   |||||||||||*|||||||||||| targets:1957   AAGACUUUCUAGCAUUGCUCAUAU   1980 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI207J06, full insert sequence	NA	coding protein	psRNATarget
AK072999.1	ncRNA:24   UUCUGAAAGAUGGUAACGAGUAUA   1   |||||||||||*|||||||||||| targets:1532   AAGACUUUCUAGCAUUGCUCAUAU   1555 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023149N01, full insert sequence	NA	coding protein	psRNATarget
XM_015767952.1	ncRNA:24   UUCUGAAAGAUGGUAACGAGUAUA   1   ||*||||||||*|||||||||||| targets:1788   AAAACUUUCUAACAUUGCUCAUAU   1811 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable galacturonosyltransferase 9 (LOC4330716), mRNA	probable galacturonosyltransferase 9(LOC4330716)	coding protein	psRNATarget