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BaseInfo

ncRNA ID	novel_osa_miR3315
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:11007310-11007438 [-]
Reference genome	IRGSP-1.0
Source	SRR2040388;SRR3123648;SRR1738235
Length	21
Mature sequence(if miRNA)	1 - UGAGAGACCUAAAGUGAACUU - 21
Stem-loop(if miRNA)	--             -   --A  U     ------G    - UG     U   C   AUAAUAUAUAUA   GUUUACUUUAGGU UCU   CU GACGU       GAAU U  UCCUU AAC GUA            G   ||||||||||||| |||   || |||||       |||| |  ||||| ||| |||   CAAGUGAAAUCCA AGA   GA CUGUA       CUUA G  AGGAA UUG CCA            G UU             G   GUA  U     AAUCAAA    A GU     -   A   UGACGAACCCCU
Stem-loop sequence	GUUUACUUUAGGUUCUACUUGACGUGGAAUUUGUCCUUUAACCGUAAUAAUAUAUAUAGGUCCCCAAGCAGUACCAGUUAAGGAUGGAAUUCAAACUAAAUGUCUAGAUGAGAGACCUAAAGUGAACUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015774795.1	ncRNA:21   UUCAAGUGAAAUCCAGAGAGU   1   ||||||||||||||||||||| targets:2446   AAGUUCACUUUAGGUCUCUCA   2466 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group S-type anion channel SLAH3 (LOC4326745), transcript variant X6, mRNA	S-type anion channel SLAH3(LOC4326745)	coding protein	psRNATarget
XM_015774787.1	ncRNA:21   UUCAAGUGAAAUCCAGAGAGU   1   ||||||||||||||||||||| targets:2455   AAGUUCACUUUAGGUCUCUCA   2475 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group S-type anion channel SLAH3 (LOC4326745), transcript variant X5, mRNA	S-type anion channel SLAH3(LOC4326745)	coding protein	psRNATarget
XM_015774762.1	ncRNA:21   UUCAAGUGAAAUCCAGAGAGU   1   ||||||||||||||||||||| targets:2569   AAGUUCACUUUAGGUCUCUCA   2589 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group S-type anion channel SLAH3 (LOC4326745), transcript variant X2, mRNA	S-type anion channel SLAH3(LOC4326745)	coding protein	psRNATarget
XM_015774757.1	ncRNA:21   UUCAAGUGAAAUCCAGAGAGU   1   ||||||||||||||||||||| targets:2578   AAGUUCACUUUAGGUCUCUCA   2598 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group S-type anion channel SLAH3 (LOC4326745), transcript variant X1, mRNA	S-type anion channel SLAH3(LOC4326745)	coding protein	psRNATarget
XM_015774802.1	ncRNA:21   UUCAAGUGAAAUCCAGAGAGU   1   ||||||||||||||||||||| targets:2600   AAGUUCACUUUAGGUCUCUCA   2620 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group S-type anion channel SLAH3 (LOC4326745), transcript variant X7, mRNA	S-type anion channel SLAH3(LOC4326745)	coding protein	psRNATarget
XM_015774779.1	ncRNA:21   UUCAAGUGAAAUCCAGAGAGU   1   ||||||||||||||||||||| targets:2623   AAGUUCACUUUAGGUCUCUCA   2643 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group S-type anion channel SLAH3 (LOC4326745), transcript variant X4, mRNA	S-type anion channel SLAH3(LOC4326745)	coding protein	psRNATarget
AK121458.1	ncRNA:21   UUCAAGUGAAAUCCAGAGAGU   1   ||||||||||||||||||||| targets:2603   AAGUUCACUUUAGGUCUCUCA   2623 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J023143J08, full insert sequence	NA	coding protein	psRNATarget
XM_015774771.1	ncRNA:21   UUCAAGUGAAAUCCAGAGAGU   1   ||||||||||||||||||||| targets:2865   AAGUUCACUUUAGGUCUCUCA   2885 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group S-type anion channel SLAH3 (LOC4326745), transcript variant X3, mRNA	S-type anion channel SLAH3(LOC4326745)	coding protein	psRNATarget
XM_015780229.1	ncRNA:21   UUCAAGUGAAAUCCAGAGAGU   1   ||||||||||||||||*|||| targets:731   AAGUUCACUUUAGGUCCCUCA   751 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277025 (LOC107277025), transcript variant X8, mRNA	uncharacterized LOC107277025(LOC107277025)	coding protein	psRNATarget
XM_015758678.1	ncRNA:21   UUCAAGUGAAAUCCAGAGAGU   1   ||||||||||||||||*|||| targets:1399   AAGUUCACUUUAGGUCCCUCA   1419 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group geranylgeranyl pyrophosphate synthase 7, chloroplastic (LOC9272383), mRNA	geranylgeranyl pyrophosphate synthase 7, chloroplastic(LOC9272383)	coding protein	psRNATarget
AK288877.1	ncRNA:21   UUCAAGUGAAAUCCAGAGAGU   1   ||||||||||||||||*|||| targets:888   AAGUUCACUUUAGGUCCCUCA   908 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090079B05, full insert sequence	NA	coding protein	psRNATarget
CT837461.1	ncRNA:21   UUCAAGUGAAAUCCAGAGAGU   1   =|*|||*|||||||||||||| targets:393   GAUUUCCCUUUAGGUCUCUCA   413 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA115F23, full insert sequence	NA	coding protein	psRNATarget