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BaseInfo

ncRNA ID novel_osa_miR3314
Species Oryza sativa
Class miRNA
Genome position Chr11:19203235-19203419 [-]
Reference genome IRGSP-1.0
Source SRR2040388;SRR2040403;SRR2040405;SRR3123645;SRR1738209;SRR1738226;SRR1738227
Length 24
Mature sequence(if miRNA) 162 - AGCCCUCGACGUGACCUACAACUU - 185
Stem-loop(if miRNA) --              C   C               AAG      AA    AACU    AGG         UAUUGUUGCAUGUUUAUAGAUUU          A
  AGCCCUCGACGUGA CUA AACUUUGUAGUUGAA   UUUUUG  UUAA    GUUU   GUCCCAAAA                       UGUAAUUUUA U
  |||||||||||||| ||| |||||||||||||||   ||||||  ||||    ||||   |||||||||                       ||||||||||
  UCGGGAGCUGCGCU GAU UUGAAACAUCAACUU   AAAAAU  AAUU    UAAA   CAGGGUUUU                       ACAUUAAAAU U
CA              A   A               AAA      AA    CAGU    --A         -----------------------          U
Stem-loop sequence AGCCCUCGACGUGACCUACAACUUUGUAGUUGAAAAGUUUUUGAAUUAAAACUGUUUAGGGUCCCAAAAUAUUGUUGCAUGUUUAUAGAUUUUGUAAUUUUAAUUUUAAAAUUACAUUUUGGGACAAAAUUGACUUAAAAUAAAAAAAAUUCAACUACAAAGUUAUAGAUCGCGUCGAGGGCUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288437.1
ncRNA:24   UUCAACAUCCAGUGCAGCUCCCGA   1
  |||||||||||||=||||||||||
targets:1402   AAGUUGUAGGUCAUGUCGAGGGCU   1425

1.5 Oryza sativa Japonica Group cDNA, clone: J090034B12, full insert sequence NA coding protein psRNATarget
HI404197.1
ncRNA:24   UUCAACAUCCAGUGCAGCUCCCGA   1
  |||||||||*||=|||||||||||
targets:165   AAGUUGUAGAUCGCGUCGAGGGCU   188

2.5 Sequence 2322 from Patent EP2074227 NA coding protein psRNATarget
LQ236327.1
ncRNA:24   UUCAACAUCCAGUGCAGCUCCCGA   1
  |||||||||*||=|||||||||||
targets:165   AAGUUGUAGAUCGCGUCGAGGGCU   188

2.5 Sequence 2322 from Patent EP2985353 NA coding protein psRNATarget
JB164658.1
ncRNA:24   UUCAACAUCCAGUGCAGCUCCCGA   1
  |||||||||*||=|||||||||||
targets:165   AAGUUGUAGAUCGCGUCGAGGGCU   188

2.5 Sequence 2322 from Patent EP2559767 NA coding protein psRNATarget
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