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BaseInfo

ncRNA ID	novel_osa_miR3312
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:28381266-28381424 [-]
Reference genome	IRGSP-1.0
Source	SRR2040388
Length	24
Mature sequence(if miRNA)	1 - AACGAGUGGUCAAACAGUGCAAGC - 24
Stem-loop(if miRNA)	--       A             C               AUGCAAAUAUAUAAAAUGAAAAG     CUUAAAGUACUUUGGAUAAUAAA   UUGUAUU UUUGACCACUCGU UUAUUUAAAAAAUUU                       UUGUG                       G   ||||||| ||||||||||||| |||||||||||||||                       |||||                       U   AACGUGA AAACUGGUGAGCA AAUAAGUUUUUUAAA                       UUUUA                       A CG       C             A               ----------------------A     AUAAUAAAUAAAAAAAACACUAA
Stem-loop sequence	UUGUAUUAUUUGACCACUCGUCUUAUUUAAAAAAUUUAUGCAAAUAUAUAAAAUGAAAAGUUGUGCUUAAAGUACUUUGGAUAAUAAAGUAAAUCACAAAAAAAAUAAAUAAUAAUUUUAAAAUUUUUUGAAUAAAACGAGUGGUCAAACAGUGCAAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288977.1	ncRNA:24   CGAACGUGACAAACUGGUGAGCAA   1   |||||||||||||||||||||||* targets:1685   GCUUGCACUGUUUGACCACUCGUC   1708 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090085K17, full insert sequence	NA	coding protein	psRNATarget
AK072811.1	ncRNA:24   CGAACGUGACAAACUGGUGAGCAA   1   |||||||||||||||||||||||* targets:966   GCUUGCACUGUUUGACCACUCGUC   989 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023143E03, full insert sequence	NA	coding protein	psRNATarget
CT837645.1	ncRNA:24   CGAACGUGACAAACUGGUGAGCAA   1   |||||||||||||||||||||||* targets:466   GCUUGCACUGUUUGACCACUCGUC   489 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN063B15, full insert sequence	NA	coding protein	psRNATarget
XM_015789761.1	ncRNA:24   CGAACGUGACAAACUGGUGAGCAA   1   ||||||||||||||||||||=||* targets:1299   GCUUGCACUGUUUGACCACUUGUC   1322 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group AT-rich interactive domain-containing protein 1B (LOC4343202), transcript variant X1, mRNA	AT-rich interactive domain-containing protein 1B(LOC4343202)	coding protein	psRNATarget
XM_015789762.1	ncRNA:24   CGAACGUGACAAACUGGUGAGCAA   1   ||||||||||||||||||||=||* targets:1299   GCUUGCACUGUUUGACCACUUGUC   1322 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group AT-rich interactive domain-containing protein 1B (LOC4343202), transcript variant X2, mRNA	AT-rich interactive domain-containing protein 1B(LOC4343202)	coding protein	psRNATarget
AK289112.1	ncRNA:24   CGAACGUGACAAACUGGUGAGCAA   1   ||||||||||||||||||||=||* targets:1312   GCUUGCACUGUUUGACCACUUGUC   1335 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090096P07, full insert sequence	NA	coding protein	psRNATarget
AK106768.1	ncRNA:24   CGAACGUGACAAACUGGUGAGCAA   1   ||||||||||||||||||=||||* targets:156   GCUUGCACUGUUUGACCAUUCGUC   179 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-115-F05, full insert sequence	NA	coding protein	psRNATarget
AK100378.1	ncRNA:24   CGAACGUGACAAACUGGUGAGCAA   1   *|||||||||||||||||=||||* targets:1393   ACUUGCACUGUUUGACCAUUCGUC   1416 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023085B20, full insert sequence	NA	coding protein	psRNATarget
AK065068.1	ncRNA:24   CGAACGUGACAAACUGGUGAGCAA   1   *|||||||||||||||||=||||* targets:1118   ACUUGCACUGUUUGACCAUUCGUC   1141 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013001K02, full insert sequence	NA	coding protein	psRNATarget
XM_015773291.1	ncRNA:24   CGAACGUGACAAACUGGUGAGCAA   1   *||||||||||||||=|||||||* targets:2150   ACUUGCACUGUUUGAUCACUCGUC   2173 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272202 (LOC9272202), mRNA	uncharacterized LOC9272202(LOC9272202)	coding protein	psRNATarget
XM_015790568.1	ncRNA:24   CGAACGUGACAAACUGGUGAGCAA   1   *||||=|||||||||||||||||* targets:733   ACUUGUACUGUUUGACCACUCGUC   756 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277036 (LOC107277036), mRNA	uncharacterized LOC107277036(Os07g0616850)	coding protein	psRNATarget
XM_015791027.1	ncRNA:24   CGAACGUGACAAACUGGUGAGCAA   1   *|||||||||||||||||||=||* targets:1011   CCUUGCACUGUUUGACCACUUGUC   1034 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277005 (LOC107277005), mRNA	uncharacterized LOC107277005(LOC107277005)	coding protein	psRNATarget
AK288595.1	ncRNA:24   CGAACGUGACAAACUGGUGAGCAA   1   *||||=|||||||||||||||||* targets:672   ACUUGUACUGUUUGACCACUCGUC   695 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090051J16, full insert sequence	NA	coding protein	psRNATarget
CT837708.1	ncRNA:24   CGAACGUGACAAACUGGUGAGCAA   1   |||||=|*|||||||||||||||* targets:530   GCUUGUAGUGUUUGACCACUCGUC   553 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA220M04, full insert sequence	NA	coding protein	psRNATarget
AK289150.1	ncRNA:24   CGAACGUGACAAACUGGUGAGCAA   1   *|||*|||||||||||||||=||* targets:2599   ACUUACACUGUUUGACCACUUGUC   2622 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090099O03, full insert sequence	NA	coding protein	psRNATarget
AK111038.1	ncRNA:24   CGAACGUGACAAACUGGUGAGCAA   1   |||||||**||||||||||||||* targets:496   GCUUGCAACGUUUGACCACUCGUC   519 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-175-A10, full insert sequence	NA	coding protein	psRNATarget
CT834713.1	ncRNA:24   CGAACGUGACAAACUGGUGAGCAA   1   |||||||**||||||||||||||* targets:498   GCUUGCAACGUUUGACCACUCGUC   521 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA008G23, full insert sequence	NA	coding protein	psRNATarget
XM_015772731.1	ncRNA:24   CGAACGUGACAAACUGGUGAGCAA   1   *=|||=|*|||||||||||||||* targets:198   CUUUGUAAUGUUUGACCACUCGUC   221 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group protein NRT1/ PTR FAMILY 6.1 (LOC4326444), mRNA	protein NRT1/ PTR FAMILY 6.1(LOC4326444)	coding protein	psRNATarget
AK288920.1	ncRNA:24   CGAACGUGACAAACUGGUGAGCAA   1   *||||||**||||||||||||||* targets:3913   ACUUGCAACGUUUGACCACUCGUC   3936 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence	NA	coding protein	psRNATarget
XM_015763075.1	ncRNA:24   CGAACGUGACAAACUGGUGAGCAA   1   ||||*||**||||||||||||||* targets:2846   GCUUACAACGUUUGACCACUCGUC   2869 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group protein trichome birefringence-like 28 (LOC4327430), transcript variant X3, mRNA	protein trichome birefringence-like 28(LOC4327430)	coding protein	psRNATarget
XM_015767968.1	ncRNA:24   CGAACGUGACAAACUGGUGAGCAA   1   |=||*||**||||||||||||||* targets:1442   GUUUACAACGUUUGACCACUCGUC   1465 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group altered inheritance rate of mitochondria protein 25 (LOC4328840), mRNA	altered inheritance rate of mitochondria protein 25(LOC4328840)	coding protein	psRNATarget