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BaseInfo

ncRNA ID	novel_osa_miR3310
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:14391666-14391784 [+]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1556020
Length	23
Mature sequence(if miRNA)	1 - UAAACUGCGAGACGAAUUUAUUU - 23
Stem-loop(if miRNA)	--    C              A  U  C      AAU    C   -A    AUAUUUAC   AG   UAAA UGCGAGACGAAUUU UU AG CUAAUU   CCGU AUU  GCAA        UGU  C   |||| |||||||||||||| || || ||||||   |||| |||  ||||        |||   AUUU ACGCUCUGCUUAGA AA UC GAUUAA   GGUA UAA  UGUU        ACA  A AC    A              A  U  U      CGC    C   AC    --------   CC
Stem-loop sequence	UAAACUGCGAGACGAAUUUAUUUAGCCUAAUUAAUCCGUCAUUAGCAAAUAUUUACUGUAGCACCACAUUGUCAAAUCAUGGCGCAAUUAGUCUUAAAAGAUUCGUCUCGCAAUUUACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288216.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *|||||||||||||||||||||| targets:724   UAAUAAAUUCGUCUCGCAGUUUA   746 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090011C22, full insert sequence	NA	coding protein	psRNATarget
XM_015769825.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *|||||||||||||||||||||| targets:719   UAAUAAAUUCGUCUCGCAGUUUA   741 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group BTB/POZ domain-containing protein At4g30940 (LOC4329965), mRNA	BTB/POZ domain-containing protein At4g30940(LOC4329965)	coding protein	psRNATarget
XM_015780200.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *|||||||||||||||||||||| targets:43   UAAUAAAUUCGUCUCGCAGUUUA   65 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g22150, chloroplastic (LOC4336891), mRNA	pentatricopeptide repeat-containing protein At3g22150, chloroplastic(LOC4336891)	coding protein	psRNATarget
AK067578.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *|||||||||||||||||||||| targets:1762   UAAUAAAUUCGUCUCGCAGUUUA   1784 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013110M15, full insert sequence	NA	coding protein	psRNATarget
AK119775.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *|||||||||||||||||||||| targets:840   UAAUAAAUUCGUCUCGCAGUUUA   862 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:002-172-G07, full insert sequence	NA	coding protein	psRNATarget
CT837782.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *|||||||||||||||||||||| targets:1526   UAAUAAAUUCGUCUCGCAGUUUA   1548 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244J06, full insert sequence	NA	coding protein	psRNATarget
CT837862.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *|||||||||||||||||||||| targets:908   UAAUAAAUUCGUCUCGCAGUUUA   930 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA123J02, full insert sequence	NA	coding protein	psRNATarget
XM_015791314.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *|||||||||||||||=|||||| targets:1966   UAAUAAAUUCGUCUCGUAGUUUA   1988 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4343872 (LOC4343872), transcript variant X7, mRNA	uncharacterized LOC4343872(LOC4343872)	coding protein	psRNATarget
XM_015764825.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *||||||||=||||||||||||| targets:65   UAAUAAAUUUGUCUCGCAGUUUA   87 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group pre-mRNA-splicing factor CWC22 homolog (LOC4351904), mRNA	pre-mRNA-splicing factor CWC22 homolog(LOC4351904)	coding protein	psRNATarget
AK064922.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *||||||||=||||||||||||| targets:2038   UAAUAAAUUUGUCUCGCAGUUUA   2060 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013000N12, full insert sequence	NA	coding protein	psRNATarget
AM778048.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *||||||||=||||||||||||| targets:65   UAAUAAAUUUGUCUCGCAGUUUA   87 Target Full Sequence	1.0	Oryza sativa Japonica Group mRNA for putative pre-mRNA-splicing factor cwc-22 (Os12g15420 gene), cultivar Azucena	NA	coding protein	psRNATarget
AK099913.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *||||||||=||||||||||||| targets:795   UAAUAAAUUUGUCUCGCAGUUUA   817 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013116E13, full insert sequence	NA	coding protein	psRNATarget
AK103332.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *||||||||||||||||=||||| targets:1012   UAAUAAAUUCGUCUCGCGGUUUA   1034 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033125N22, full insert sequence	NA	coding protein	psRNATarget
AK241427.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *||||||||||||||||=||||| targets:1522   UAAUAAAUUCGUCUCGCGGUUUA   1544 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065161N01, full insert sequence	NA	coding protein	psRNATarget
AK241401.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *||||||||||||||||=||||| targets:1443   UAAUAAAUUCGUCUCGCGGUUUA   1465 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065158N07, full insert sequence	NA	coding protein	psRNATarget
XM_015782486.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *||||||||||||||||=||||| targets:1442   UAAUAAAUUCGUCUCGCGGUUUA   1464 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group GDSL esterase/lipase At5g45910 (LOC9269310), mRNA	GDSL esterase/lipase At5g45910(LOC9269310)	coding protein	psRNATarget
AK071854.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *||||||||||||||||=||||| targets:615   UAAUAAAUUCGUCUCGCGGUUUA   637 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023117P14, full insert sequence	NA	coding protein	psRNATarget
AK288422.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *||||||||||||||||=||||| targets:708   UAAUAAAUUCGUCUCGCGGUUUA   730 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090032F09, full insert sequence	NA	coding protein	psRNATarget
AK288471.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *|||||||||||||||||||||* targets:1775   UAAUAAAUUCGUCUCGCAGUUUC   1797 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090037K14, full insert sequence	NA	coding protein	psRNATarget
AK288843.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *|||||||||||||||||||||* targets:2215   UAAUAAAUUCGUCUCGCAGUUUU   2237 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090074J10, full insert sequence	NA	coding protein	psRNATarget
AK288184.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *|||||||||||||||||||||* targets:959   UAAUAAAUUCGUCUCGCAGUUUU   981 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090005P17, full insert sequence	NA	coding protein	psRNATarget
AK288436.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *||||||||=|||||||=||||| targets:5485   UAAUAAAUUUGUCUCGCGGUUUA   5507 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090033P03, full insert sequence	NA	coding protein	psRNATarget
AK289087.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *||||=||||||||||=|||||| targets:4334   UAAUAGAUUCGUCUCGUAGUUUA   4356 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090095K03, full insert sequence	NA	coding protein	psRNATarget
AK288298.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *||||||||=|||||||=||||| targets:1481   UAAUAAAUUUGUCUCGCGGUUUA   1503 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090019N21, full insert sequence	NA	coding protein	psRNATarget
XM_015775745.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *|||||||||||||||=|||||* targets:354   UAAUAAAUUCGUCUCGUAGUUUC   376 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription factor BHLH148 (LOC4334060), mRNA	transcription factor BHLH148(LOC4334060)	coding protein	psRNATarget
AK243163.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *|||||||||||||||=|||||* targets:298   UAAUAAAUUCGUCUCGUAGUUUC   320 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J100034L01, full insert sequence	NA	coding protein	psRNATarget
AK071825.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *||||||||||||||||=||||* targets:1403   UAAUAAAUUCGUCUCGCGGUUUC   1425 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023115H13, full insert sequence	NA	coding protein	psRNATarget
AK288631.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *||||||||||||||*||||||| targets:2822   UAAUAAAUUCGUCUCUCAGUUUA   2844 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090055C12, full insert sequence	NA	coding protein	psRNATarget
AK288682.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *|||||||||*|||||||||||| targets:435   UAAUAAAUUCAUCUCGCAGUUUA   457 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090059I11, full insert sequence	NA	coding protein	psRNATarget
AK119753.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *|||||||||||||||||*|||| targets:2019   UAAUAAAUUCGUCUCGCAAUUUA   2041 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-167-E02, full insert sequence	NA	coding protein	psRNATarget
CT837676.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *|||||||||*|||||||||||| targets:456   UAAUAAAUUCAUCUCGCAGUUUA   478 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN028D22, full insert sequence	NA	coding protein	psRNATarget
AK288617.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *|||||||||*|||||||||||* targets:2683   UAAUAAAUUCAUCUCGCAGUUUU   2705 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090054B15, full insert sequence	NA	coding protein	psRNATarget
AK242281.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   |||-|||||||||||||||*||| targets:1753   AAA-AAAUUCGUCUCGCAGAUUA   1774 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J075189D01, full insert sequence	NA	coding protein	psRNATarget
XM_015789357.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *=||||||||||||||*|||||* targets:1110   UGAUAAAUUCGUCUCGAAGUUUU   1132 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic (LOC4342342), transcript variant X2, mRNA	peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic(LOC4342342)	coding protein	psRNATarget
XM_015789358.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *=||||||||||||||*|||||* targets:1145   UGAUAAAUUCGUCUCGAAGUUUU   1167 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic (LOC4342342), transcript variant X3, mRNA	peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic(LOC4342342)	coding protein	psRNATarget
XM_015789356.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *=||||||||||||||*|||||* targets:1139   UGAUAAAUUCGUCUCGAAGUUUU   1161 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic (LOC4342342), transcript variant X1, mRNA	peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic(LOC4342342)	coding protein	psRNATarget
AK240803.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   *=||||||||||||||*|||||* targets:1050   UGAUAAAUUCGUCUCGAAGUUUU   1072 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065005A21, full insert sequence	NA	coding protein	psRNATarget
XM_015769709.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   |||-|=||||||||||||*|||| targets:3078   AAA-AGAUUCGUCUCGCAAUUUA   3099 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RPP13 (LOC4328990), transcript variant X1, mRNA	disease resistance protein RPP13(LOC4328990)	coding protein	psRNATarget
XM_015769710.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   |||-|=||||||||||||*|||| targets:2944   AAA-AGAUUCGUCUCGCAAUUUA   2965 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RPP13 (LOC4328990), transcript variant X2, mRNA	disease resistance protein RPP13(LOC4328990)	coding protein	psRNATarget
AK287930.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   |||-|=||||||||||||*|||| targets:2464   AAA-AGAUUCGUCUCGCAAUUUA   2485 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065218P20, full insert sequence	NA	coding protein	psRNATarget
AK120234.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   |||-|=||||||||||||*|||| targets:2513   AAA-AGAUUCGUCUCGCAAUUUA   2534 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013043L17, full insert sequence	NA	coding protein	psRNATarget
AK288948.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   |||-|=||||||||||||*|||| targets:535   AAA-AGAUUCGUCUCGCAAUUUA   556 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090083I09, full insert sequence	NA	coding protein	psRNATarget
XM_015785584.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   |||-|=||||||||||||*|||| targets:2342   AAA-AGAUUCGUCUCGCAAUUUA   2363 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial (LOC4341876), transcript variant X1, mRNA	external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial(LOC4341876)	coding protein	psRNATarget
XM_015785585.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   |||-|=||||||||||||*|||| targets:2209   AAA-AGAUUCGUCUCGCAAUUUA   2230 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial (LOC4341876), transcript variant X2, mRNA	external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial(LOC4341876)	coding protein	psRNATarget
AK070572.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   |||-|=||||||||||||*|||| targets:2221   AAA-AGAUUCGUCUCGCAAUUUA   2242 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023055P17, full insert sequence	NA	coding protein	psRNATarget
AK102878.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   |||-|=||||||||||||*|||| targets:2138   AAA-AGAUUCGUCUCGCAAUUUA   2159 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033112G02, full insert sequence	NA	coding protein	psRNATarget
XM_015772097.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   |||-|=||||||||||||*|||| targets:1923   AAA-AGAUUCGUCUCGCAAUUUA   1944 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cinnamate beta-D-glucosyltransferase (LOC4328553), mRNA	cinnamate beta-D-glucosyltransferase(LOC4328553)	coding protein	psRNATarget
AK101996.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   |||-|=||||||||||||*|||| targets:1705   AAA-AGAUUCGUCUCGCAAUUUA   1726 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033079J12, full insert sequence	NA	coding protein	psRNATarget
LQ236633.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   |||-|=||||||||||||*|||| targets:97   AAA-AGAUUCGUCUCGCAAUUUA   118 Target Full Sequence	2.5	Sequence 2628 from Patent EP2985353	NA	coding protein	psRNATarget
HI404503.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   |||-|=||||||||||||*|||| targets:97   AAA-AGAUUCGUCUCGCAAUUUA   118 Target Full Sequence	2.5	Sequence 2628 from Patent EP2074227	NA	coding protein	psRNATarget
JB164964.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   |||-|=||||||||||||*|||| targets:97   AAA-AGAUUCGUCUCGCAAUUUA   118 Target Full Sequence	2.5	Sequence 2628 from Patent EP2559767	NA	coding protein	psRNATarget
AK288942.1	ncRNA:23   UUUAUUUAAGCAGAGCGUCAAAU   1   =||-|=||||||||||||*|||| targets:3377   GAA-AGAUUCGUCUCGCAAUUUA   3398 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090083D07, full insert sequence	NA	coding protein	psRNATarget