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BaseInfo

ncRNA ID	novel_osa_miR3309
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:28096965-28097134 [-]
Reference genome	IRGSP-1.0
Source	SRR2040387
Length	24
Mature sequence(if miRNA)	1 - UCAAAAUUGGACACGGAAACUCAU - 24
Stem-loop(if miRNA)	--        A       C   AAA   UC            A      UCAAAAAAAUUAAAAAACAUGUCACAC  UACUAUUCAUAUU   GAGUUUUC UGUCUAA UUU   CAU  GUCUUAUUUGAA UUUUUU                           GG             U   |||||||| ||||||| |||   |||  |||||||||||| ||||||                           ||             U   CUCAAAGG ACAGGUU AAA   GUA  CAGAAUAAACUU AAAAAA                           UG             A UA        C       A   CUA   GA            A      -------------UCUAAUUAUACAAA  ACAUCAAUCUACU
Stem-loop sequence	GAGUUUUCAUGUCUAACUUUAAACAUUCGUCUUAUUUGAAAUUUUUUUCAAAAAAAUUAAAAAACAUGUCACACGGUACUAUUCAUAUUUUAUCAUCUAACUACAGUAAACAUAUUAAUCUAAAAAAAUUCAAAUAAGACAGAUGAUCAAAAUUGGACACGGAAACUCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015787170.1	ncRNA:24   UACUCAAAGGCACAGGUUAAAACU   1   ||||||||=|*||||||||||||| targets:2295   AUGAGUUUUCAUGUCCAAUUUUGA   2318 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group protein ALTERED XYLOGLUCAN 4-like (LOC107278043), mRNA	protein ALTERED XYLOGLUCAN 4-like(LOC107278043)	coding protein	psRNATarget
AK065567.1	ncRNA:24   UACUCAAAGGCACAGGUUAAAACU   1   |||=||||||||||||||*||||| targets:818   AUGGGUUUCCGUGUCCAACUUUGA   841 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013033D20, full insert sequence	NA	coding protein	psRNATarget
HI403802.1	ncRNA:24   UACUCAAAGGCACAGGUUAAAACU   1   ||||||||=|||||||||*||||| targets:3   AUGAGUUUUCGUGUCCAACUUUGA   26 Target Full Sequence	2.5	Sequence 1927 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235932.1	ncRNA:24   UACUCAAAGGCACAGGUUAAAACU   1   ||||||||=|||||||||*||||| targets:3   AUGAGUUUUCGUGUCCAACUUUGA   26 Target Full Sequence	2.5	Sequence 1927 from Patent EP2985353	NA	coding protein	psRNATarget
JB164263.1	ncRNA:24   UACUCAAAGGCACAGGUUAAAACU   1   ||||||||=|||||||||*||||| targets:3   AUGAGUUUUCGUGUCCAACUUUGA   26 Target Full Sequence	2.5	Sequence 1927 from Patent EP2559767	NA	coding protein	psRNATarget
AK287962.1	ncRNA:24   UACUCAAAGGCACAGGUUAAAACU   1   *|||||||=|||||||||*||||| targets:992   CUGAGUUUUCGUGUCCAACUUUGA   1015 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J075061F20, full insert sequence	NA	coding protein	psRNATarget
XM_015784718.1	ncRNA:24   UACUCAAAGGCACAGGUUA-AAACU   1   *||-|||||||||||||||-||||| targets:1383   CUG-GUUUCCGUGUCCAAUGUUUGA   1406 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group basic 7S globulin (LOC4326528), mRNA	basic 7S globulin(LOC4326528)	coding protein	psRNATarget
XM_015775382.1	ncRNA:24   UACUCAAAGGCACAGGUUAAAACU   1   *|||*|||=|||*||||||||||| targets:2283   CUGAAUUUUCGUUUCCAAUUUUGA   2306 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4332140 (LOC4332140), mRNA	uncharacterized LOC4332140(LOC4332140)	coding protein	psRNATarget
XM_015770898.1	ncRNA:24   UACUCAAAGGCACAGGUUAAAACU   1   *||=*|||*|||||||||*||||| targets:3528   CUGGAUUUACGUGUCCAACUUUGA   3551 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At5g65560 (LOC4329793), mRNA	pentatricopeptide repeat-containing protein At5g65560(LOC4329793)	coding protein	psRNATarget