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BaseInfo

ncRNA ID	novel_osa_miR3308
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:2897902-2898001 [+]
Reference genome	IRGSP-1.0
Source	SRR2040387;SRR3123646;SRR5351738;SRR1738228
Length	24
Mature sequence(if miRNA)	77 - ACCGGGACUAAAGAUCAUAGGGCC - 100
Stem-loop(if miRNA)	U    --         U                                U  GUUU  UGAUUUUUA UCCCGGUUAGUAACACCAACCGGGACUAAAAA A  ||||  ||||||||| ||||||||||||||||||||||||||||||||  CGGG  ACUAGAAAU AGGGCCAAUCAUUGUGGUUGGCCCUGAUUUUU G C    AU         C                                G
Stem-loop sequence	UGUUUUGAUUUUUAUUCCCGGUUAGUAACACCAACCGGGACUAAAAAUAGGUUUUUAGUCCCGGUUGGUGUUACUAACCGGGACUAAAGAUCAUAGGGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288191.1	ncRNA:24   CC--GGGAUACUAGAAAUCAGGGCCA   1   ||--|==|*||||||||||||||||| targets:1552   GGAACUUUUUGAUCUUUAGUCCCGGU   1577 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090007A11, full insert sequence	NA	coding protein	psRNATarget
LQ236416.1	ncRNA:24   CCGGGA--UACUAGAAAUCAGGGCCA   1   ***=||--|||||||||||||||||| targets:32   AUAUCUGCAUGAUCUUUAGUCCCGGU   57 Target Full Sequence	2.5	Sequence 2411 from Patent EP2985353	NA	coding protein	psRNATarget
HI404286.1	ncRNA:24   CCGGGA--UACUAGAAAUCAGGGCCA   1   ***=||--|||||||||||||||||| targets:32   AUAUCUGCAUGAUCUUUAGUCCCGGU   57 Target Full Sequence	2.5	Sequence 2411 from Patent EP2074227	NA	coding protein	psRNATarget
JB164747.1	ncRNA:24   CCGGGA--UACUAGAAAUCAGGGCCA   1   ***=||--|||||||||||||||||| targets:32   AUAUCUGCAUGAUCUUUAGUCCCGGU   57 Target Full Sequence	2.5	Sequence 2411 from Patent EP2559767	NA	coding protein	psRNATarget
AK288734.1	ncRNA:24   CCGGGAUA--CUAGAAAUCAGGGCCA   1   ||*|*|||--|||||||||||||||| targets:37   GGGCAUAUUUGAUCUUUAGUCCCGGU   62 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090063I24, full insert sequence	NA	coding protein	psRNATarget
XM_015779829.1	ncRNA:24   CCGGGAUACUAGAAAUCAGGGCCA   1   ||*||*|*|||||||||||||||| targets:1692   GGGCCGAGGAUCUUUAGUCCCGGU   1715 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
XM_015779829.1	ncRNA:24   CCGGGAUACUAGAAAUCAGGGCCA   1   ******||*||||||||||||||| targets:1641   CUAAAAAUCAUCUUUAGUCCCGGU   1664 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
AK288463.1	ncRNA:24   CCGGGAUACUAGAAAUCAGGGCCA   1   ||*||*|*|||||||||||||||| targets:547   GGGCCGAGGAUCUUUAGUCCCGGU   570 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:24   CCGGGAUAC-UAGAAAUCAGGGCCA   1   ******|||-||||||||||||||| targets:634   CUAAAGAUGGAUCUUUAGUCCCGGU   658 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
AK288224.1	ncRNA:24   CCGGGAUACUAGAAAUCAGGGCCA   1   **||||**|||||||||||||||| targets:1252   CCCCCUCGGAUCUUUAGUCCCGGU   1275 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090012B15, full insert sequence	NA	coding protein	psRNATarget
AK061057.1	ncRNA:24   CCGGGAUACUAGAAAUCAGGGCCA   1   ******|||||||||||||||||| targets:240   UUAAAAAUGAUCUUUAGUCCCGGU   263 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:006-205-H07, full insert sequence	NA	coding protein	psRNATarget
XM_015755256.1	ncRNA:24   CCGGGAUACUAGAAAUCAGGGCCA   1   ****=*|||||||||||||||||| targets:135   CUAAUAAUGAUCUUUAGUCCCGGU   158 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346665 (LOC4346665), transcript variant X2, mRNA	uncharacterized LOC4346665(LOC4346665)	coding protein	psRNATarget
AK288598.1	ncRNA:24   CCGG------GAUACUAGAAAUCAGGGCCA   1   ||==------=||*|||||||||||||||| targets:956   GGUUGGUAAGUUACGAUCUUUAGUCCCGGU   985 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090051P05, full insert sequence	NA	coding protein	psRNATarget
AK288438.1	ncRNA:24   CCGGGAUACUAGAAAUCAGGGCCA   1   **|==|*||||||||||*|||||| targets:1303   AACUUUUUGAUCUUUAGCCCCGGU   1326 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
XM_015774888.1	ncRNA:24   CCGGGAUACUAGAAAUCAGGGCCA   1   ******|||||||*|||||||||| targets:1379   CUAAAAAUGAUCUCUAGUCCCGGU   1402 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X3, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
XM_015774887.1	ncRNA:24   CCGGGAUACUAGAAAUCAGGGCCA   1   ******|||||||*|||||||||| targets:1385   CUAAAAAUGAUCUCUAGUCCCGGU   1408 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X2, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
XM_015755226.1	ncRNA:24   CCGGGAUACUAGAAAUCAGGGCCA   1   ****=*|*|||||||||||||||| targets:62   AAGAUGAGGAUCUUUAGUCCCGGU   85 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278786 (LOC107278786), mRNA	uncharacterized LOC107278786(LOC107278786)	coding protein	psRNATarget
AK288859.1	ncRNA:24   CCGGGAUACUAGAAAUCAGGGCCA   1   *|****|*|||||||||||||||| targets:2189   CGGGAAAAGAUCUUUAGUCCCGGU   2212 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090076J15, full insert sequence	NA	coding protein	psRNATarget