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BaseInfo

ncRNA ID	novel_osa_miR3306
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:371193-371336 [+]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1556020
Length	24
Mature sequence(if miRNA)	121 - GUUAUAUUUUGGGACAGAGGGAGU - 144
Stem-loop(if miRNA)	--                     AAG           UU      CACUUA      CU        AG   A   UCCCUUUGUCCCAAAAUAUAA   GGAUUUUGGAC  GUGGGA      CUAGUA  AUAAAUCU  AUA C   |||||||||||||||||||||   |||||||||||  ||||||      ||||||  ||||||||  |||   AGGGAGACAGGGUUUUAUAUU   CCUAAAACUUG  UAUCUU      GAUCAU  UGUUUAGA  UGU U UG                     --G           CC      AUAAAA      AU        CU   C
Stem-loop sequence	UCCCUUUGUCCCAAAAUAUAAAAGGGAUUUUGGACUUGUGGGACACUUACUAGUACUAUAAAUCUAGAUAACUCUGUUCAGAUUUGUUAUACUAGAAAAUAUUCUAUCCGUUCAAAAUCCGUUAUAUUUUGGGACAGAGGGAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015770193.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||||||||||||||||=| targets:1818   ACUCCCUCUGUCCCAAAAUAUAGC   1841 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329136 (LOC4329136), transcript variant X1, mRNA	uncharacterized LOC4329136(LOC4329136)	coding protein	psRNATarget
XM_015770193.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||||||||||||||||||||||* targets:1033   ACUCCCUCUGUCCCAAAAUAUAAG   1056 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329136 (LOC4329136), transcript variant X1, mRNA	uncharacterized LOC4329136(LOC4329136)	coding protein	psRNATarget
XM_015779315.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||||||||||||||||=| targets:4415   ACUCCCUCUGUCCCAAAAUAUAGC   4438 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group protein Rf1, mitochondrial (LOC9271155), mRNA	protein Rf1, mitochondrial(LOC9271155)	coding protein	psRNATarget
AK099713.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||||||=|||||||||||||||* targets:1073   ACUCCCUUUGUCCCAAAAUAUAAG   1096 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013084B13, full insert sequence	NA	coding protein	psRNATarget
AK101936.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||=|||||||||||||||||||* targets:1888   ACUUCCUCUGUCCCAAAAUAUAAG   1911 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J033074D16, full insert sequence	NA	coding protein	psRNATarget
AK100110.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||*||||||||||||||| targets:2412   ACUCCCUCCGUCCCAAAAUAUAAC   2435 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023005H19, full insert sequence	NA	coding protein	psRNATarget
AK287611.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||*||||||||||||||| targets:1442   ACUCCCUCCGUCCCAAAAUAUAAC   1465 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J065059A09, full insert sequence	NA	coding protein	psRNATarget
XM_015763567.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||*||||||||||||||| targets:1370   ACUCCCUCCGUCCCAAAAUAUAAC   1393 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107276434 (LOC107276434), mRNA	uncharacterized LOC107276434(LOC107276434)	coding protein	psRNATarget
AK288798.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||=|||||||||||||||=|||* targets:1614   ACUUCCUCUGUCCCAAAAUGUAAG   1637 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090070H05, full insert sequence	NA	coding protein	psRNATarget
XM_015789722.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||*|||=||||||||||| targets:3188   ACUCCCUCCGUCUCAAAAUAUAAC   3211 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group DNA repair protein RAD16 (LOC4343361), mRNA	DNA repair protein RAD16(LOC4343361)	coding protein	psRNATarget
XM_015784405.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||*||||||||||||||* targets:5516   ACUCCCUCCGUCCCAAAAUAUAAG   5539 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X18, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
XM_015784387.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||*||||||||||||||* targets:5516   ACUCCCUCCGUCCCAAAAUAUAAG   5539 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
XM_015784396.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||*||||||||||||||* targets:5511   ACUCCCUCCGUCCCAAAAUAUAAG   5534 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X10, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
XM_015784402.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||*||||||||||||||* targets:5516   ACUCCCUCCGUCCCAAAAUAUAAG   5539 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X15, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
XM_015784393.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||*||||||||||||||* targets:5516   ACUCCCUCCGUCCCAAAAUAUAAG   5539 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X7, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
XM_015784388.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||*||||||||||||||* targets:5516   ACUCCCUCCGUCCCAAAAUAUAAG   5539 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
XM_015784391.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||*||||||||||||||* targets:5516   ACUCCCUCCGUCCCAAAAUAUAAG   5539 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X5, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
XM_015784397.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||*||||||||||||||* targets:5516   ACUCCCUCCGUCCCAAAAUAUAAG   5539 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X11, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
XM_015784389.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||*||||||||||||||* targets:5516   ACUCCCUCCGUCCCAAAAUAUAAG   5539 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
XM_015784404.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||*||||||||||||||* targets:5516   ACUCCCUCCGUCCCAAAAUAUAAG   5539 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X17, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
XM_015784395.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||*||||||||||||||* targets:5516   ACUCCCUCCGUCCCAAAAUAUAAG   5539 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X9, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
XM_015784392.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||*||||||||||||||* targets:5025   ACUCCCUCCGUCCCAAAAUAUAAG   5048 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X6, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
XM_015784399.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||*||||||||||||||* targets:4991   ACUCCCUCCGUCCCAAAAUAUAAG   5014 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X12, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
XM_015784390.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||*||||||||||||||* targets:4093   ACUCCCUCCGUCCCAAAAUAUAAG   4116 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X4, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
XM_015784401.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||*||||||||||||||* targets:3568   ACUCCCUCCGUCCCAAAAUAUAAG   3591 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X14, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
XM_015784400.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||*||||||||||||||* targets:3520   ACUCCCUCCGUCCCAAAAUAUAAG   3543 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g48810 (LOC4337713), transcript variant X13, mRNA	pentatricopeptide repeat-containing protein At3g48810(LOC4337713)	coding protein	psRNATarget
AK288631.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||||||||*||||||||* targets:1281   ACUCCCUCUGUCCCUAAAUAUAAG   1304 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090055C12, full insert sequence	NA	coding protein	psRNATarget
AK289013.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||||||||||||||*|||||||* targets:1351   ACUCCCUCUGUCCCAUAAUAUAAG   1374 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090089J03, full insert sequence	NA	coding protein	psRNATarget
XM_015761638.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||*||||||||||||||* targets:3864   ACUCCCUCCGUCCCAAAAUAUAAG   3887 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group putative receptor protein kinase ZmPK1 (LOC107278048), mRNA	putative receptor protein kinase ZmPK1(LOC107278048)	coding protein	psRNATarget
AK242602.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||*||||||||||||||* targets:3742   ACUCCCUCCGUCCCAAAAUAUAAG   3765 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090014K11, full insert sequence	NA	coding protein	psRNATarget
AK288546.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||*||||||||||||||* targets:1251   ACUCCCUCCGUCCCAAAAUAUAAA   1274 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090046I04, full insert sequence	NA	coding protein	psRNATarget
AK288180.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||*||||||||||||||* targets:1267   ACUCCCUCCGUCCCAAAAUAUAAG   1290 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090005C24, full insert sequence	NA	coding protein	psRNATarget
AK066842.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||*||||||||||||||* targets:923   ACUCCCUCCGUCCCAAAAUAUAAG   946 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013084A11, full insert sequence	NA	coding protein	psRNATarget
XM_015763075.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||||||||||||||*|||||||* targets:2807   ACUCCCUCUGUCCCAUAAUAUAAG   2830 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein trichome birefringence-like 28 (LOC4327430), transcript variant X3, mRNA	protein trichome birefringence-like 28(LOC4327430)	coding protein	psRNATarget
XM_015763251.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||*||||||||||||||* targets:1580   ACUCCCUCCGUCCCAAAAUAUAAA   1603 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group F-box only protein 7 (LOC4351522), transcript variant X2, mRNA	F-box only protein 7(LOC4351522)	coding protein	psRNATarget
XM_015770646.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||*||||||||||||||* targets:1943   ACUCCCUCCGUCCCAAAAUAUAAG   1966 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group protein DETOXIFICATION 46, chloroplastic (LOC4328128), mRNA	protein DETOXIFICATION 46, chloroplastic(LOC4328128)	coding protein	psRNATarget
AK100759.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||*||||||||||||||* targets:626   ACUCCCUCCGUCCCAAAAUAUAAG   649 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023119B10, full insert sequence	NA	coding protein	psRNATarget
AK062793.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||*||||||||||||||* targets:180   ACUCCCUCCGUCCCAAAAUAUAAA   203 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:001-107-C05, full insert sequence	NA	coding protein	psRNATarget
AK101891.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||=|||*||||||||||||||= targets:3610   ACUCUCUCCGUCCCAAAAUAUAAU   3633 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033070O08, full insert sequence	NA	coding protein	psRNATarget
AK318582.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||=||||*|||||||||||||=| targets:23   ACUUCCUCCGUCCCAAAAUAUAGC   46 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090094D17, full insert sequence	NA	coding protein	psRNATarget
CT831842.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   =|||||||*||=|||||||||||| targets:1557   GCUCCCUCCGUUCCAAAAUAUAAC   1580 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA248N23, full insert sequence	NA	coding protein	psRNATarget
XM_015760168.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||||=||*||||||||||||||= targets:1461   ACUCCUUCCGUCCCAAAAUAUAAU   1484 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350559 (LOC4350559), mRNA	uncharacterized LOC4350559(LOC4350559)	coding protein	psRNATarget
AK109615.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||||=||*||||||||||||||= targets:1461   ACUCCUUCCGUCCCAAAAUAUAAU   1484 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-137-G12, full insert sequence	NA	coding protein	psRNATarget
AK103056.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||*|||=|||||||||||||||* targets:3049   ACUACCUUUGUCCCAAAAUAUAAA   3072 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033117K01, full insert sequence	NA	coding protein	psRNATarget
XM_015790547.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||=|||*||||||||||||||* targets:2398   ACUCUCUCCGUCCCAAAAUAUAAG   2421 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group primary amine oxidase (LOC4343673), mRNA	primary amine oxidase(LOC4343673)	coding protein	psRNATarget
CT832890.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||=|||||*|||||||||||||* targets:2395   ACUUCCUCUAUCCCAAAAUAUAAG   2418 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA230O14, full insert sequence	NA	coding protein	psRNATarget
CT832892.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||=|||||*|||||||||||||* targets:2360   ACUUCCUCUAUCCCAAAAUAUAAG   2383 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA245M22, full insert sequence	NA	coding protein	psRNATarget
AK099435.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||=|||*||||||||||||||* targets:1678   ACUCUCUCCGUCCCAAAAUAUAAG   1701 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013014O02, full insert sequence	NA	coding protein	psRNATarget
XM_015787285.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||*||||||||=||||||||||* targets:1422   ACUACCUCUGUCUCAAAAUAUAAA   1445 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group very-long-chain 3-oxoacyl-CoA reductase 1-like (LOC107276302), mRNA	very-long-chain 3-oxoacyl-CoA reductase 1-like(LOC107276302)	coding protein	psRNATarget
HI403629.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||||=||*||||||||||||||* targets:5   ACUCCUUCCGUCCCAAAAUAUAAA   28 Target Full Sequence	3.0	Sequence 1754 from Patent EP2074227	NA	coding protein	psRNATarget
JB164090.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||||=||*||||||||||||||* targets:5   ACUCCUUCCGUCCCAAAAUAUAAA   28 Target Full Sequence	3.0	Sequence 1754 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235759.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||||=||*||||||||||||||* targets:5   ACUCCUUCCGUCCCAAAAUAUAAA   28 Target Full Sequence	3.0	Sequence 1754 from Patent EP2985353	NA	coding protein	psRNATarget
AK102320.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||*||||*||||||||||||||| targets:2496   ACUACCUCCGUCCCAAAAUAUAAC   2519 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J033090I04, full insert sequence	NA	coding protein	psRNATarget
XM_015782537.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||*||||*||||||||||||||| targets:2437   ACUACCUCCGUCCCAAAAUAUAAC   2460 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4338795 (LOC4338795), mRNA	uncharacterized LOC4338795(LOC4338795)	coding protein	psRNATarget
XM_015757229.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||*||||*||||||||||||||| targets:1711   ACUACCUCCGUCCCAAAAUAUAAC   1734 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group transcription factor UNE10 (LOC4349351), transcript variant X1, mRNA	transcription factor UNE10(LOC4349351)	coding protein	psRNATarget
AK107495.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||**|||||||||||||| targets:885   ACUCCCUCCAUCCCAAAAUAUAAC   908 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-129-D07, full insert sequence	NA	coding protein	psRNATarget
XM_015757232.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||*||||*||||||||||||||| targets:1620   ACUACCUCCGUCCCAAAAUAUAAC   1643 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group transcription factor UNE10 (LOC4349351), transcript variant X4, mRNA	transcription factor UNE10(LOC4349351)	coding protein	psRNATarget
XM_015774394.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||*||||||*|||||||| targets:1892   ACUCCCUCCGUCCCAUAAUAUAAC   1915 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group U-box domain-containing protein 4-like (LOC107278225), mRNA	U-box domain-containing protein 4-like(LOC107278225)	coding protein	psRNATarget
AK287925.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||*||||*||||||||||||||| targets:1622   ACUACCUCCGUCCCAAAAUAUAAC   1645 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J065218F01, full insert sequence	NA	coding protein	psRNATarget
XM_015785837.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||*||||*||||||||||||||| targets:1194   ACUACCUCCGUCCCAAAAUAUAAC   1217 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group rac-like GTP-binding protein 4 (LOC4340590), mRNA	rac-like GTP-binding protein 4(LOC4340590)	coding protein	psRNATarget
AK060851.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||**|||||||||||||| targets:1119   ACUCCCUCGAUCCCAAAAUAUAAC   1142 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:001-034-E08, full insert sequence	NA	coding protein	psRNATarget
CT830272.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||**|||||||||||||| targets:1113   ACUCCCUCGAUCCCAAAAUAUAAC   1136 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA052A21, full insert sequence	NA	coding protein	psRNATarget
AF380335.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||*||||*||||||||||||||| targets:956   ACUACCUCCGUCCCAAAAUAUAAC   979 Target Full Sequence	1.0	Oryza sativa putative Rop family GTPase ROP4 mRNA, complete cds	NA	coding protein	psRNATarget
AK061102.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||*||||*||||||||||||||| targets:937   ACUACCUCCGUCCCAAAAUAUAAC   960 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:006-207-B05, full insert sequence	NA	coding protein	psRNATarget
EF576581.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||**|||||||||||||| targets:699   ACUCCCUCGAUCCCAAAAUAUAAC   722 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) clone OSS-481-539-C4 chlorophyll a-b binding protein mRNA, partial cds	NA	coding protein	psRNATarget
CT830273.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||||**|||||||||||||| targets:626   ACUCCCUCGAUCCCAAAAUAUAAC   649 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN076N12, full insert sequence	NA	coding protein	psRNATarget
JB164371.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||*||||*||||||||||||||| targets:6   ACUACCUCCGUCCCAAAAUAUAAC   29 Target Full Sequence	1.0	Sequence 2035 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236040.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||*||||*||||||||||||||| targets:6   ACUACCUCCGUCCCAAAAUAUAAC   29 Target Full Sequence	1.0	Sequence 2035 from Patent EP2985353	NA	coding protein	psRNATarget
HI403910.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||*||||*||||||||||||||| targets:6   ACUACCUCCGUCCCAAAAUAUAAC   29 Target Full Sequence	1.0	Sequence 2035 from Patent EP2074227	NA	coding protein	psRNATarget
AK288463.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   *|||||||*||||||||||||||* targets:2817   UCUCCCUCCGUCCCAAAAUAUAAG   2840 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
XM_015766569.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |=|=||||*||||||||||||||* targets:780   AUUUCCUCCGUCCCAAAAUAUAAA   803 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group forkhead box protein G1 (LOC4324335), mRNA	forkhead box protein G1(LOC4324335)	coding protein	psRNATarget
AK288011.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |=|=||||*||||||||||||||* targets:745   AUUUCCUCCGUCCCAAAAUAUAAA   768 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J075116J02, full insert sequence	NA	coding protein	psRNATarget
XM_015795281.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |=|*||||*||||||||||||||| targets:3631   AUUACCUCCGUCCCAAAAUAUAAC   3654 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group protein FAR1-RELATED SEQUENCE 5 (LOC4344748), mRNA	protein FAR1-RELATED SEQUENCE 5(LOC4344748)	coding protein	psRNATarget
AK288303.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||*||||*|||||||||||||=| targets:2076   ACUACCUCCGUCCCAAAAUAUAGC   2099 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090020E14, full insert sequence	NA	coding protein	psRNATarget
CT835144.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||*||||*||||=|||||||||| targets:1416   ACUACCUCCGUCCUAAAAUAUAAC   1439 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA228J24, full insert sequence	NA	coding protein	psRNATarget
AK242713.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||=||||*||||||*|||||||| targets:1456   ACUUCCUCCGUCCCAUAAUAUAAC   1479 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090041O10, full insert sequence	NA	coding protein	psRNATarget
AK062145.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||*||||*||||=|||||||||| targets:117   ACUACCUCCGUCCUAAAAUAUAAC   140 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-045-G09, full insert sequence	NA	coding protein	psRNATarget
CT835770.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||*||||*||=|||||||||||| targets:918   ACUACCUCCGUUCCAAAAUAUAAC   941 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA003J03, full insert sequence	NA	coding protein	psRNATarget
HI404417.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||*||||*|||||||||||||=| targets:5   ACUACCUCCGUCCCAAAAUAUAGC   28 Target Full Sequence	2.5	Sequence 2542 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236547.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||*||||*|||||||||||||=| targets:5   ACUACCUCCGUCCCAAAAUAUAGC   28 Target Full Sequence	2.5	Sequence 2542 from Patent EP2985353	NA	coding protein	psRNATarget
JB164878.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   |||*||||*|||||||||||||=| targets:5   ACUACCUCCGUCCCAAAAUAUAGC   28 Target Full Sequence	2.5	Sequence 2542 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015770558.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||*|*||||||||||||||* targets:5547   ACUCCCACCGUCCCAAAAUAUAAG   5570 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC4329027), transcript variant X8, mRNA	putative disease resistance protein RGA1(LOC4329027)	coding protein	psRNATarget
XM_015770553.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||*|*||||||||||||||* targets:5257   ACUCCCACCGUCCCAAAAUAUAAG   5280 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC4329027), transcript variant X3, mRNA	putative disease resistance protein RGA1(LOC4329027)	coding protein	psRNATarget
XM_015770552.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||*|*||||||||||||||* targets:5254   ACUCCCACCGUCCCAAAAUAUAAG   5277 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC4329027), transcript variant X2, mRNA	putative disease resistance protein RGA1(LOC4329027)	coding protein	psRNATarget
XM_015770551.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||*|*||||||||||||||* targets:5165   ACUCCCACCGUCCCAAAAUAUAAG   5188 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC4329027), transcript variant X1, mRNA	putative disease resistance protein RGA1(LOC4329027)	coding protein	psRNATarget
XM_015770557.1	ncRNA:24   UGAGGGAGACAGGGUUUUAUAUUG   1   ||||||*|*||||||||||||||* targets:5159   ACUCCCACCGUCCCAAAAUAUAAG   5182 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA1 (LOC4329027), transcript variant X7, mRNA	putative disease resistance protein RGA1(LOC4329027)	coding protein	psRNATarget