Search result

BaseInfo

ncRNA ID	novel_osa_miR3305
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:10053923-10054105 [-]
Reference genome	IRGSP-1.0
Source	SRR2040387
Length	24
Mature sequence(if miRNA)	1 - AUACGAUUUGACGCUGAACAAAAG - 24
Stem-loop(if miRNA)	--           C                A           C   AC    -AA    AC           - AU   -  CACGCCGACUC   UUUGUUCAGCG CAAAUCGUGUGGCGCU AACUUAGACAC UCA  GCCA   UAGC  GGUGUUGAAUG C  GUU GG           A   ||||||||||| |||||||||||||||| ||||||||||| |||  ||||   ||||  ||||||||||| |  ||| ||           G   AAACAAGUCGC GUUUAGCAUACCGCGA UUGAAUCUGUG AGU  CGGU   GUUG  UCGCGACUUAC G  CGG GG           C GA           A                C           U   CA    GCA    -A           A CA   U  CACCUACCCUU
Stem-loop sequence	UUUGUUCAGCGCCAAAUCGUGUGGCGCUAAACUUAGACACCUCAACGCCAAAUAGCACGGUGUUGAAUGCAUGUUGGCACGCCGACUCAGCUUCCCAUCCACGGUGGCACGACAUUCAGCGCUAGUUGACGUGGCACUGAUGUGUCUAAGUUCAGCGCCAUACGAUUUGACGCUGAACAAAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015788686.1	ncRNA:24   GAAAACAAGUCGCAGUUUAGCAUA   1   =|||||||=||||||||||||||| targets:1625   UUUUUGUUUAGCGUCAAAUCGUAU   1648 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group probable inactive purple acid phosphatase 28 (LOC4341954), transcript variant X2, mRNA	probable inactive purple acid phosphatase 28(LOC4341954)	coding protein	psRNATarget
XM_015788685.1	ncRNA:24   GAAAACAAGUCGCAGUUUAGCAUA   1   =|||||||=||||||||||||||| targets:1507   UUUUUGUUUAGCGUCAAAUCGUAU   1530 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group probable inactive purple acid phosphatase 28 (LOC4341954), transcript variant X1, mRNA	probable inactive purple acid phosphatase 28(LOC4341954)	coding protein	psRNATarget
LQ236294.1	ncRNA:24   GAAAACAAGUCGCAGUUUAGCAUA   1   ||||||||=||||*|||||||||| targets:81   CUUUUGUUUAGCGCCAAAUCGUAU   104 Target Full Sequence	2.5	Sequence 2289 from Patent EP2985353	NA	coding protein	psRNATarget
JB164625.1	ncRNA:24   GAAAACAAGUCGCAGUUUAGCAUA   1   ||||||||=||||*|||||||||| targets:81   CUUUUGUUUAGCGCCAAAUCGUAU   104 Target Full Sequence	2.5	Sequence 2289 from Patent EP2559767	NA	coding protein	psRNATarget
HI404164.1	ncRNA:24   GAAAACAAGUCGCAGUUUAGCAUA   1   ||||||||=||||*|||||||||| targets:81   CUUUUGUUUAGCGCCAAAUCGUAU   104 Target Full Sequence	2.5	Sequence 2289 from Patent EP2074227	NA	coding protein	psRNATarget