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BaseInfo

ncRNA ID novel_osa_miR3304
Species Oryza sativa
Class miRNA
Genome position Chr9:15671624-15671735 [-]
Reference genome IRGSP-1.0
Source SRR2040387;SRR2040389;SRR2040397;SRR2040401
Length 24
Mature sequence(if miRNA) 1 - AAUGUGAGAAAUGCUAAAAUGACU - 24
Stem-loop(if miRNA) --     C            A                   ------        CAUAU
  UCAUU UAGUAUUUCUCA AUUUAUAUUGAUGUUAAUG      AAUCUAGA     A
  ||||| |||||||||||| |||||||||||||||||||      ||||||||
  AGUAA AUCGUAAAGAGU UAAGUAUAACUACAAUUAC      UUAGAUUU     U
UC     A            G                   AAUUAU        AUCUA
Stem-loop sequence UCAUUCUAGUAUUUCUCAAAUUUAUAUUGAUGUUAAUGAAUCUAGACAUAUAUAUCUAUUUAGAUUUAUUAACAUUAACAUCAAUAUGAAUGUGAGAAAUGCUAAAAUGACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015792577.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  ||||||||||||||||||||||||
targets:1438   AGUCAUUUUAGCAUUUCUCACAUU   1461

0.0 PREDICTED: Oryza sativa Japonica Group calcineurin subunit B (LOC4345696), transcript variant X1, mRNA calcineurin subunit B(LOC4345696) coding protein psRNATarget
AK065951.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||=||||||||||||=|||||||
targets:2732   AGUUAUUUUAGCAUUUUUCACAUU   2755

1.5 Oryza sativa Japonica Group cDNA clone:J013045C05, full insert sequence NA coding protein psRNATarget
AK288568.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||||||||||||*||||||
targets:2781   AGUCAUUUUAGCAUUUCCCACAUU   2804

1.5 Oryza sativa Japonica Group cDNA, clone: J090048B06, full insert sequence NA coding protein psRNATarget
XM_015764779.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*||||||||||||||||
targets:4397   AGUCAUUCUAGCAUUUCUCACAUU   4420

1.0 PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X4, mRNA putative disease resistance RPP13-like protein 3(LOC4352543) coding protein psRNATarget
XM_015764777.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*||||||||||||||||
targets:3563   AGUCAUUCUAGCAUUUCUCACAUU   3586

1.0 PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X2, mRNA putative disease resistance RPP13-like protein 3(LOC4352543) coding protein psRNATarget
AK288390.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*||||||||||||||||
targets:679   AGUCAUUCUAGCAUUUCUCACAUU   702

1.0 Oryza sativa Japonica Group cDNA, clone: J090027G18, full insert sequence NA coding protein psRNATarget
XM_015764776.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*||||||||||||||||
targets:3327   AGUCAUUCUAGCAUUUCUCACAUU   3350

1.0 PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X1, mRNA putative disease resistance RPP13-like protein 3(LOC4352543) coding protein psRNATarget
XM_015764778.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*||||||||||||||||
targets:3322   AGUCAUUCUAGCAUUUCUCACAUU   3345

1.0 PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X3, mRNA putative disease resistance RPP13-like protein 3(LOC4352543) coding protein psRNATarget
AK120148.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*||||||||||||||||
targets:463   AGUCAUUCUAGCAUUUCUCACAUU   486

1.0 Oryza sativa Japonica Group cDNA clone:J013029J05, full insert sequence NA coding protein psRNATarget
CT837594.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||||||||||||*||||||
targets:1286   AGUCAUUUUAGCAUUUCCCACAUU   1309

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN021M15, full insert sequence NA coding protein psRNATarget
CT837528.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*||||||||||||||||
targets:828   AGUCAUUCUAGCAUUUCUCACAUU   851

1.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN037B21, full insert sequence NA coding protein psRNATarget
AK288952.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*|||=||||||||||||
targets:258   AGUCAUUCUAGUAUUUCUCACAUU   281

2.5 Oryza sativa Japonica Group cDNA, clone: J090083K12, full insert sequence NA coding protein psRNATarget
AK070012.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*|||=||||||||||||
targets:2339   AGUCAUUCUAGUAUUUCUCACAUU   2362

2.5 Oryza sativa Japonica Group cDNA clone:J023037B16, full insert sequence NA coding protein psRNATarget
XM_015765624.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  ||||||||||*|||||=|||||||
targets:1134   AGUCAUUUUAACAUUUUUCACAUU   1157

2.5 PREDICTED: Oryza sativa Japonica Group probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 (LOC4324918), mRNA probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(LOC4324918) coding protein psRNATarget
AK241345.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  ||||||||||*|||||=|||||||
targets:1127   AGUCAUUUUAACAUUUUUCACAUU   1150

2.5 Oryza sativa Japonica Group cDNA, clone: J065148C06, full insert sequence NA coding protein psRNATarget
AK288502.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*||||||||||||=|||
targets:564   AGUCAUUCUAGCAUUUCUCAUAUU   587

2.5 Oryza sativa Japonica Group cDNA, clone: J090041D12, full insert sequence NA coding protein psRNATarget
AK070352.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*||||||||=|||||||
targets:418   AGUCAUUCUAGCAUUUUUCACAUU   441

2.5 Oryza sativa Japonica Group cDNA clone:J023051F10, full insert sequence NA coding protein psRNATarget
XM_015767720.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*||||||||||||=|||
targets:565   AGUCAUUCUAGCAUUUCUCAUAUU   588

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4330679 (LOC4330679), mRNA uncharacterized LOC4330679(LOC4330679) coding protein psRNATarget
AK288214.1
ncRNA:24   UCAG-UAAAAUCGUAAAGAGUGUAA   1
  ||||-|||||||||||||*||||||
targets:2609   AGUCCAUUUUAGCAUUUCCCACAUU   2633

1.5 Oryza sativa Japonica Group cDNA, clone: J090010G11, full insert sequence NA coding protein psRNATarget
AK288229.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*|||||||||*||||||
targets:3665   AGUCAUUCUAGCAUUUCCCACAUU   3688

2.5 Oryza sativa Japonica Group cDNA, clone: J090012M05, full insert sequence NA coding protein psRNATarget
XM_015780916.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*|||||||||*||||||
targets:4738   AGUCAUUCUAGCAUUUCCCACAUU   4761

2.5 PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X1, mRNA DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691) coding protein psRNATarget
XM_015780918.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*|||||||||*||||||
targets:4729   AGUCAUUCUAGCAUUUCCCACAUU   4752

2.5 PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X3, mRNA DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691) coding protein psRNATarget
XM_015780917.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*|||||||||*||||||
targets:4680   AGUCAUUCUAGCAUUUCCCACAUU   4703

2.5 PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X2, mRNA DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691) coding protein psRNATarget
XM_015783728.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*|||||||||*||||||
targets:2800   AGUCAUUCUAGCAUUUCCCACAUU   2823

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9271594 (LOC9271594), transcript variant X1, mRNA uncharacterized LOC9271594(LOC9271594) coding protein psRNATarget
XM_015770157.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||==||*|||=||||||||||||
targets:4108   AGUUGUUAUAGUAUUUCUCACAUU   4131

2.5 PREDICTED: Oryza sativa Japonica Group RING-H2 finger protein ATL3 (LOC4331022), transcript variant X1, mRNA RING-H2 finger protein ATL3(LOC4331022) coding protein psRNATarget
XM_015770158.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||==||*|||=||||||||||||
targets:4108   AGUUGUUAUAGUAUUUCUCACAUU   4131

2.5 PREDICTED: Oryza sativa Japonica Group RING-H2 finger protein ATL3 (LOC4331022), transcript variant X2, mRNA RING-H2 finger protein ATL3(LOC4331022) coding protein psRNATarget
XM_015781780.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*|||||||||*||||||
targets:3145   AGUCAUUCUAGCAUUUCCCACAUU   3168

2.5 PREDICTED: Oryza sativa Japonica Group protein ASPARTIC PROTEASE IN GUARD CELL 2 (LOC4337402), mRNA protein ASPARTIC PROTEASE IN GUARD CELL 2(LOC4337402) coding protein psRNATarget
AK102955.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*|||||||||*||||||
targets:769   AGUCAUUCUAGCAUUUCCCACAUU   792

2.5 Oryza sativa Japonica Group cDNA clone:J033115G04, full insert sequence NA coding protein psRNATarget
XM_015760919.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*|||||||||*||||||
targets:16   AGUCAUUCUAGCAUUUCCCACAUU   39

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350122 (LOC4350122), mRNA uncharacterized LOC4350122(LOC4350122) coding protein psRNATarget
AK109758.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |*|||||||||||||||*||||||
targets:1644   AAUCAUUUUAGCAUUUCCCACAUU   1667

1.5 Oryza sativa Japonica Group cDNA clone:002-146-G06, full insert sequence NA coding protein psRNATarget
XM_015779937.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*|||||||||*||||||
targets:980   AGUCAUUCUAGCAUUUCCCACAUU   1003

2.5 PREDICTED: Oryza sativa Japonica Group small nuclear ribonucleoprotein Sm D1 (LOC4336118), transcript variant X1, mRNA small nuclear ribonucleoprotein Sm D1(LOC4336118) coding protein psRNATarget
XM_015779938.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*|||||||||*||||||
targets:888   AGUCAUUCUAGCAUUUCCCACAUU   911

2.5 PREDICTED: Oryza sativa Japonica Group small nuclear ribonucleoprotein Sm D1 (LOC4336118), transcript variant X2, mRNA small nuclear ribonucleoprotein Sm D1(LOC4336118) coding protein psRNATarget
AK099655.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*|||||||||*||||||
targets:695   AGUCAUUCUAGCAUUUCCCACAUU   718

2.5 Oryza sativa Japonica Group cDNA clone:J013066C07, full insert sequence NA coding protein psRNATarget
CT831791.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*|*||||||||||||||
targets:1761   AGUCAUUCUUGCAUUUCUCACAUU   1784

2.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI241K23, full insert sequence NA coding protein psRNATarget
XM_015760082.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*|||||||||*||||||
targets:1495   AGUCAUUCUAGCAUUUCCCACAUU   1518

2.5 PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4350193), mRNA putative protease Do-like 14(LOC4350193) coding protein psRNATarget
AK106586.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*|||||||||*||||||
targets:614   AGUCAUUCUAGCAUUUCCCACAUU   637

2.5 Oryza sativa Japonica Group cDNA clone:002-111-E12, full insert sequence NA coding protein psRNATarget
XM_015782137.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*|||||||||*||||||
targets:1514   AGUCAUUCUAGCAUUUCCCACAUU   1537

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339294 (LOC4339294), mRNA uncharacterized LOC4339294(LOC4339294) coding protein psRNATarget
AK287994.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*|||||||||*||||||
targets:1465   AGUCAUUCUAGCAUUUCCCACAUU   1488

2.5 Oryza sativa Japonica Group cDNA, clone: J075099E21, full insert sequence NA coding protein psRNATarget
XM_015764968.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*||*|||||||||||||
targets:1145   AGUCAUUCUAUCAUUUCUCACAUU   1168

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269766 (LOC9269766), mRNA uncharacterized LOC9269766(LOC9269766) coding protein psRNATarget
CT836294.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*|||||||||*||||||
targets:1217   AGUCAUUAUAGCAUUUCCCACAUU   1240

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN014A10, full insert sequence NA coding protein psRNATarget
AK061459.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||==||*|||=||||||||||||
targets:1314   AGUUGUUAUAGUAUUUCUCACAUU   1337

2.5 Oryza sativa Japonica Group cDNA clone:006-308-A03, full insert sequence NA coding protein psRNATarget
CT837490.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*|||||||||*||||||
targets:837   AGUCAUUCUAGCAUUUCCCACAUU   860

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109F07, full insert sequence NA coding protein psRNATarget
XM_015783671.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*|||||||||*||||||
targets:984   AGUCAUUCUAGCAUUUCCCACAUU   1007

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339170 (LOC4339170), mRNA uncharacterized LOC4339170(LOC4339170) coding protein psRNATarget
XM_015788299.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*|||||||||*||||||
targets:629   AGUCAUUCUAGCAUUUCCCACAUU   652

2.5 PREDICTED: Oryza sativa Japonica Group GPI-anchored protein LORELEI (LOC4340837), transcript variant X1, mRNA GPI-anchored protein LORELEI(LOC4340837) coding protein psRNATarget
XM_015788302.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*|||||||||*||||||
targets:607   AGUCAUUCUAGCAUUUCCCACAUU   630

2.5 PREDICTED: Oryza sativa Japonica Group GPI-anchored protein LORELEI (LOC4340837), transcript variant X3, mRNA GPI-anchored protein LORELEI(LOC4340837) coding protein psRNATarget
XM_015788300.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*|||||||||*||||||
targets:598   AGUCAUUCUAGCAUUUCCCACAUU   621

2.5 PREDICTED: Oryza sativa Japonica Group GPI-anchored protein LORELEI (LOC4340837), transcript variant X2, mRNA GPI-anchored protein LORELEI(LOC4340837) coding protein psRNATarget
AK100772.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||||||*|||||||||*||||||
targets:600   AGUCAUUCUAGCAUUUCCCACAUU   623

2.5 Oryza sativa Japonica Group cDNA clone:J023120A05, full insert sequence NA coding protein psRNATarget
XM_015788932.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||=|||*|||||||||*||||||
targets:2899   AGUUAUUAUAGCAUUUCCCACAUU   2922

2.5 PREDICTED: Oryza sativa Japonica Group kanadaptin (LOC4340752), mRNA kanadaptin(LOC4340752) coding protein psRNATarget
AK288266.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  ||*||||*||||||||||||=|||
targets:1540   AGCCAUUCUAGCAUUUCUCAUAUU   1563

2.5 Oryza sativa Japonica Group cDNA, clone: J090016H18, full insert sequence NA coding protein psRNATarget
XM_015759228.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||*|||*||*|||||||||||||
targets:2087   AGUAAUUGUAACAUUUCUCACAUU   2110

2.0 PREDICTED: Oryza sativa Japonica Group MLO-like protein 9 (LOC4349258), mRNA MLO-like protein 9(LOC4349258) coding protein psRNATarget
XM_015795234.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |*|||||*|*||||||||||||||
targets:1756   AUUCAUUCUUGCAUUUCUCACAUU   1779

2.0 PREDICTED: Oryza sativa Japonica Group glycoprotein 3-alpha-L-fucosyltransferase A (LOC4345809), mRNA glycoprotein 3-alpha-L-fucosyltransferase A(LOC4345809) coding protein psRNATarget
AK099681.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |*|||||*|*||||||||||||||
targets:1765   AUUCAUUCUUGCAUUUCUCACAUU   1788

2.0 Oryza sativa Japonica Group cDNA clone:J013071F22, full insert sequence NA coding protein psRNATarget
AK072272.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |||*|||*||*|||||||||||||
targets:1827   AGUAAUUGUAACAUUUCUCACAUU   1850

2.0 Oryza sativa Japonica Group cDNA clone:J023004C21, full insert sequence NA coding protein psRNATarget
CT837839.1
ncRNA:24   UCAGUAAAAUCGUAAAGAGUGUAA   1
  |*|||||*|||||||||*||||||
targets:955   AAUCAUUCUAGCAUUUCCCACAUU   978

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105C15, full insert sequence NA coding protein psRNATarget
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