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BaseInfo

ncRNA ID novel_osa_miR3303
Species Oryza sativa
Class miRNA
Genome position Chr11:17684210-17684318 [+]
Reference genome IRGSP-1.0
Source SRR2040387
Length 22
Mature sequence(if miRNA) 88 - UAGGUUUUAAUAUUAUAGGACG - 109
Stem-loop(if miRNA) -U   -         U      G       C           UA    A     A
  UCC AUAAUAUUA AACCUA GACUGGA GGGAUGUUUCA  UAGU CAAUG A
  ||| ||||||||| |||||| ||||||| |||||||||||  |||| ||||| U
  AGG UAUUAUAAU UUGGAU CUGACCU CUCUGCAAAGU  AUCA GUUAC C
GC   A         U      A       A           --    C     U
Stem-loop sequence UUCCAUAAUAUUAUAACCUAGGACUGGACGGGAUGUUUCAUAUAGUACAAUGAAUCUCAUUGCACUAUGAAACGUCUCAUCCAGUCAUAGGUUUUAAUAUUAUAGGACG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015789263.1
ncRNA:22   GCAGGAUAUUAUAAUUUUGGAU   1
  |||||||*|||||*||||||||
targets:4327   CGUCCUAAAAUAUAAAAACCUA   4348

2.5 PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g73710-like (LOC107276837), mRNA pentatricopeptide repeat-containing protein At1g73710-like(LOC107276837) coding protein psRNATarget