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BaseInfo

ncRNA ID novel_osa_miR3300
Species Oryza sativa
Class miRNA
Genome position Chr8:9008378-9008448 [-]
Reference genome IRGSP-1.0
Source SRR2040387;SRR1738241
Length 24
Mature sequence(if miRNA) 48 - GAAAUUGUUUGGCUGAGCUCCAGC - 71
Stem-loop(if miRNA) --  AA         UG              GAGG
  GA  UUGUUUGGC  AGCUCCAGCUCCAG    G
  ||  |||||||||  ||||||||||||||    G
  CU  GACAAACCG  UCGAGGUCGAGGUU    U
AU  CG         UG              GAGG
Stem-loop sequence GAAAUUGUUUGGCUGAGCUCCAGCUCCAGGAGGGGUGGAGUUGGAGCUGGAGCUGUGCCAAACAGGCUCUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK120400.1
ncRNA:24   CGACCUCGAGUCGGUUUGUUAAAG   1
  ||||||||||||||||||||||||
targets:2423   GCUGGAGCUCAGCCAAACAAUUUC   2446

0.0 Oryza sativa Japonica Group cDNA clone:J013088D23, full insert sequence NA coding protein psRNATarget
XM_015786448.1
ncRNA:24   CGACCUCGAGUCGGUUUGUUAAAG   1
  |||||||||||||||||||=||||
targets:859   GCUGGAGCUCAGCCAAACAGUUUC   882

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281192 (LOC107281192), transcript variant X5, mRNA uncharacterized LOC107281192(Os06g0609001) coding protein psRNATarget
XM_015786446.1
ncRNA:24   CGACCUCGAGUCGGUUUGUUAAAG   1
  |||||||||||||||||||=||||
targets:892   GCUGGAGCUCAGCCAAACAGUUUC   915

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281192 (LOC107281192), transcript variant X3, mRNA uncharacterized LOC107281192(Os06g0609001) coding protein psRNATarget
XM_015786447.1
ncRNA:24   CGACCUCGAGUCGGUUUGUUAAAG   1
  |||||||||||||||||||=||||
targets:905   GCUGGAGCUCAGCCAAACAGUUUC   928

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281192 (LOC107281192), transcript variant X4, mRNA uncharacterized LOC107281192(Os06g0609001) coding protein psRNATarget
XM_015786444.1
ncRNA:24   CGACCUCGAGUCGGUUUGUUAAAG   1
  |||||||||||||||||||=||||
targets:910   GCUGGAGCUCAGCCAAACAGUUUC   933

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281192 (LOC107281192), transcript variant X1, mRNA uncharacterized LOC107281192(Os06g0609001) coding protein psRNATarget
XM_015786445.1
ncRNA:24   CGACCUCGAGUCGGUUUGUUAAAG   1
  |||||||||||||||||||=||||
targets:923   GCUGGAGCUCAGCCAAACAGUUUC   946

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281192 (LOC107281192), transcript variant X2, mRNA uncharacterized LOC107281192(Os06g0609001) coding protein psRNATarget
CT829735.1
ncRNA:24   CGACCUCGAGUCGGUUUGUUAAAG   1
  |||||||||||||||||||=||||
targets:284   GCUGGAGCUCAGCCAAACAGUUUC   307

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA104I06, full insert sequence NA coding protein psRNATarget
XM_015766500.1
ncRNA:24   CGACCUCGAGUCGGUUUGUUAAAG   1
  |||||||||||||||||||=||||
targets:1127   GCUGGAGCUCAGCCAAACAGUUUC   1150

1.5 PREDICTED: Oryza sativa Japonica Group probable staphylococcal-like nuclease CAN1 (LOC107276328), transcript variant X2, mRNA probable staphylococcal-like nuclease CAN1(LOC107276328) coding protein psRNATarget
XM_015766499.1
ncRNA:24   CGACCUCGAGUCGGUUUGUUAAAG   1
  |||||||||||||||||||=||||
targets:1136   GCUGGAGCUCAGCCAAACAGUUUC   1159

1.5 PREDICTED: Oryza sativa Japonica Group probable staphylococcal-like nuclease CAN1 (LOC107276328), transcript variant X1, mRNA probable staphylococcal-like nuclease CAN1(LOC107276328) coding protein psRNATarget
XM_015760175.1
ncRNA:24   CGACCUCGAGUCGGUUUGUUAAAG   1
  |||||||||||||||||||=||||
targets:771   GCUGGAGCUCAGCCAAACAGUUUC   794

1.5 PREDICTED: Oryza sativa Japonica Group F-box only protein 7 (LOC4350849), mRNA F-box only protein 7(LOC4350849) coding protein psRNATarget
AK288048.1
ncRNA:24   CGACCUCGAGUCGGUUUGUUAAAG   1
  |||||||||||||||||||=||||
targets:3476   GCUGGAGCUCAGCCAAACAGUUUC   3499

1.5 Oryza sativa Japonica Group cDNA, clone: J075146M20, full insert sequence NA coding protein psRNATarget
XM_015779315.1
ncRNA:24   CGACCUCGAGUCGGUUUGUUAAAG   1
  |||||||||||||||||||=||||
targets:3729   GCUGGAGCUCAGCCAAACAGUUUC   3752

1.5 PREDICTED: Oryza sativa Japonica Group protein Rf1, mitochondrial (LOC9271155), mRNA protein Rf1, mitochondrial(LOC9271155) coding protein psRNATarget
XM_015787270.1
ncRNA:24   CGACCUCGAGUCGGUUUGUUAAAG   1
  |||||||||||||||||=||||||
targets:9534   GCUGGAGCUCAGCCAAAUAAUUUC   9557

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4341670 (LOC4341670), transcript variant X1, mRNA uncharacterized LOC4341670(Os06g0647801) coding protein psRNATarget
XM_015757319.1
ncRNA:24   CGACCUCGAGUCGGUUUGUUAAAG   1
  *|||||||||||||||||||||||
targets:146   ACUGGAGCUCAGCCAAACAAUUUC   169

0.0 PREDICTED: Oryza sativa Japonica Group glutathione S-transferase U17 (LOC4349167), mRNA glutathione S-transferase U17(LOC4349167) coding protein psRNATarget
AK110345.1
ncRNA:24   CGACCUCGAGUCGGUUUGUUAAAG   1
  |||||||||||||||||||=|||=
targets:2639   GCUGGAGCUCAGCCAAACAGUUUU   2662

2.5 Oryza sativa Japonica Group cDNA clone:002-164-G05, full insert sequence NA coding protein psRNATarget
AK065802.1
ncRNA:24   CGACCUCGAGUCGGUUUGUUAAAG   1
  *||||||||||||||||||=||||
targets:1631   ACUGGAGCUCAGCCAAACAGUUUC   1654

1.5 Oryza sativa Japonica Group cDNA clone:J013036O21, full insert sequence NA coding protein psRNATarget
XM_015764612.1
ncRNA:24   CGACCUCGAGUCGGUUUGUUAAAG   1
  |=|||||||=||=|||||||||||
targets:2094   GUUGGAGCUUAGUCAAACAAUUUC   2117

2.5 PREDICTED: Oryza sativa Japonica Group aspartic proteinase nepenthesin-1 (LOC4352651), transcript variant X2, mRNA aspartic proteinase nepenthesin-1(LOC4352651) coding protein psRNATarget
XM_015764611.1
ncRNA:24   CGACCUCGAGUCGGUUUGUUAAAG   1
  |=|||||||=||=|||||||||||
targets:2094   GUUGGAGCUUAGUCAAACAAUUUC   2117

2.5 PREDICTED: Oryza sativa Japonica Group aspartic proteinase nepenthesin-1 (LOC4352651), transcript variant X1, mRNA aspartic proteinase nepenthesin-1(LOC4352651) coding protein psRNATarget
XM_015768175.1
ncRNA:24   CGACCUCGAGUCGGUUUGUUAAAG   1
  **|||||||||||||||||=||||
targets:414   AGUGGAGCUCAGCCAAACAGUUUC   437

1.5 PREDICTED: Oryza sativa Japonica Group kinesin-like protein KIN12B (LOC9270703), transcript variant X2, mRNA kinesin-like protein KIN12B(LOC9270703) coding protein psRNATarget
XM_015768173.1
ncRNA:24   CGACCUCGAGUCGGUUUGUUAAAG   1
  **|||||||||||||||||=||||
targets:413   AGUGGAGCUCAGCCAAACAGUUUC   436

1.5 PREDICTED: Oryza sativa Japonica Group kinesin-like protein KIN12B (LOC9270703), transcript variant X1, mRNA kinesin-like protein KIN12B(LOC9270703) coding protein psRNATarget
XM_015766456.1
ncRNA:24   CGACCUCGAGUCGGUUUGUUAAAG   1
  |=||*||||||||||||||=||||
targets:1904   GUUGUAGCUCAGCCAAACAGUUUC   1927

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4326508 (LOC4326508), transcript variant X2, mRNA uncharacterized LOC4326508(LOC4326508) coding protein psRNATarget
XM_015768499.1
ncRNA:24   CGACCUCGAGUCGGUUUGUUAAAG   1
  *||*|||||||||||||||=||||
targets:1109   CCUAGAGCUCAGCCAAACAGUUUC   1132

1.5 PREDICTED: Oryza sativa Japonica Group calcineurin B-like protein 8 (LOC107276173), transcript variant X2, mRNA calcineurin B-like protein 8(LOC107276173) coding protein psRNATarget
XM_015768498.1
ncRNA:24   CGACCUCGAGUCGGUUUGUUAAAG   1
  *||*|||||||||||||||=||||
targets:1142   CCUAGAGCUCAGCCAAACAGUUUC   1165

1.5 PREDICTED: Oryza sativa Japonica Group calcineurin B-like protein 8 (LOC107276173), transcript variant X1, mRNA calcineurin B-like protein 8(LOC107276173) coding protein psRNATarget
AK106692.1
ncRNA:24   CGAC--CUCGAGUCGGUUUGUUAAAG   1
  |||*--|||||||||||||||=||||
targets:1047   GCUCCAGAGCUCAGCCAAACAGUUUC   1072

1.5 Oryza sativa Japonica Group cDNA clone:002-114-C09, full insert sequence NA coding protein psRNATarget
AK289129.1
ncRNA:24   CGA-C-CUCGAGUCGGUUUGUUAAAG   1
  |||-|-|||||*=||||||||||||*
targets:498   GCUUGCGAGCUGGGCCAAACAAUUUG   523

3.0 Oryza sativa Japonica Group cDNA, clone: J090098I02, full insert sequence NA coding protein psRNATarget
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