Search result

BaseInfo

ncRNA ID	novel_osa_miR3297
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:16604691-16604747 [+]
Reference genome	IRGSP-1.0
Source	SRR2040387
Length	24
Mature sequence(if miRNA)	34 - ACCGGGACUAAAGAUGGUUUGGCC - 57
Stem-loop(if miRNA)	U  ---   G                - GU  GC   ACC AUCUUUAGUCCUGGUU G  A  ||   ||| |||||||||||||||| |  CG   UGG UAGAAAUCAGGGCCAA C  A C  GUU   -                A AC
Stem-loop sequence	UGCACCGAUCUUUAGUCCUGGUUGGUAACACAAACCGGGACUAAAGAUGGUUUGGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288153.1	ncRNA:24   CCGGUUUGGUAGAAAUCAGGGCCA   1   ***=|=|=|||||||||||||||| targets:32   CUAUAGAUCAUCUUUAGUCCCGGU   55 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J080319C04, full insert sequence	NA	coding protein	psRNATarget
AK242216.1	ncRNA:24   CCGGUUUGGUAGAAAUCAGGGCCA   1   *|*=||*||**||||||||||||| targets:578   UGAUAACCCCCCUUUAGUCCCGGU   601 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J075172F09, full insert sequence	NA	coding protein	psRNATarget
XM_015774888.1	ncRNA:24   CCGGUUUGGUAGAAAUCAGGGCCA   1   ***=|=|=|||||||||||||||| targets:1433   CUAUAGAUCAUCUUUAGUCCCGGU   1456 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X3, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
XM_015774887.1	ncRNA:24   CCGGUUUGGUAGAAAUCAGGGCCA   1   ***=|=|=|||||||||||||||| targets:1439   CUAUAGAUCAUCUUUAGUCCCGGU   1462 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X2, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
AK100339.1	ncRNA:24   CCGGUUUGGUAGAAAUCAGGGCCA   1   ||**||||||||||||*||||||| targets:1999   GGAGAAACCAUCUUUACUCCCGGU   2022 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023081I19, full insert sequence	NA	coding protein	psRNATarget
XM_015759291.1	ncRNA:24   CCGGUUUGGUAGAAAUCAGGGCCA   1   ||**||||||||||||*||||||| targets:1998   GGAGAAACCAUCUUUACUCCCGGU   2021 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group proline-rich receptor-like protein kinase PERK4 (LOC4347953), mRNA	proline-rich receptor-like protein kinase PERK4(LOC4347953)	coding protein	psRNATarget
AK288863.1	ncRNA:24   CCGGUUUGGUAGAAAUCAGGGCCA   1   ||**||||||||||||*||||||| targets:958   GGAGAAACCAUCUUUACUCCCGGU   981 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090077I20, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:24   CCGGUUUGGUAGAAAUCAGGGCCA   1   ***||||=*||||||||||||||| targets:417   CUACAAAUGAUCUUUAGUCCCGGU   440 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
XM_015778766.1	ncRNA:24   CCGGUUUGGUAGAAAUCAGGGCCA   1   **=**||||**||||||||||||| targets:958   UUUGUAACCCCCUUUAGUCCCGGU   981 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group jacalin-related lectin 9 (LOC4335495), mRNA	jacalin-related lectin 9(LOC4335495)	coding protein	psRNATarget
AK061057.1	ncRNA:24   CCGGUUUGGUAGAAAUCAGGGCCA   1   ****|||=*||||||||||||||| targets:240   UUAAAAAUGAUCUUUAGUCCCGGU   263 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:006-205-H07, full insert sequence	NA	coding protein	psRNATarget
XM_015755979.1	ncRNA:24   CCGGUUUGGUAGAAAUCAGGGCCA   1   ****|||=|||||*|||||||||| targets:1380   AAAAAAAUCAUCUAUAGUCCCGGU   1403 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group PTI1-like tyrosine-protein kinase At3g15890 (LOC107276656), mRNA	PTI1-like tyrosine-protein kinase At3g15890(LOC107276656)	coding protein	psRNATarget
AK288859.1	ncRNA:24   CCGGUUUGGUAGAAAUCAGGGCCA   1   *|=*||=*=||||||||||||||| targets:2230   AGUAAAGAUAUCUUUAGUCCCGGU   2253 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090076J15, full insert sequence	NA	coding protein	psRNATarget
AK288859.1	ncRNA:24   CCGGUUUGGUAGAAAUCAGGGCCA   1   ||--|||**||||||||||||||| targets:2191   GG--AAAAGAUCUUUAGUCCCGGU   2212 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090076J15, full insert sequence	NA	coding protein	psRNATarget
AK288377.1	ncRNA:24   CCGGUUUGGUAGAAAUCAGGGCCA   1   *****|=|*||||||||||||||| targets:1368   AAGAUAGCGAUCUUUAGUCCCGGU   1391 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090026K06, full insert sequence	NA	coding protein	psRNATarget