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BaseInfo

ncRNA ID novel_osa_miR3296
Species Oryza sativa
Class miRNA
Genome position Chr7:1664958-1665016 [-]
Reference genome IRGSP-1.0
Source SRR2040387
Length 24
Mature sequence(if miRNA) 36 - UUCCGAUCGUUGGAUCUAGCUGGG - 59
Stem-loop(if miRNA) --   C        GA      UGG  AG
  UUC GAUCGUUG  UCUAGC   GC  G
  ||| ||||||||  ||||||   ||  A
  AAG UUAGCAAC  AGAUUG   CG  U
CA   U        UC      UUA  AG
Stem-loop sequence UUCCGAUCGUUGGAUCUAGCUGGGCAGGAUGAGCAUUGUUAGACUCAACGAUUUGAAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI404119.1
ncRNA:24   GGGUCGAUCUAGGUUGCUAGCCUU   1
  =||||=||||||||||||||||||
targets:94   UCCAGUUAGAUCCAACGAUCGGAA   117

1.0 Sequence 2244 from Patent EP2074227 NA coding protein psRNATarget
LQ236249.1
ncRNA:24   GGGUCGAUCUAGGUUGCUAGCCUU   1
  =||||=||||||||||||||||||
targets:94   UCCAGUUAGAUCCAACGAUCGGAA   117

1.0 Sequence 2244 from Patent EP2985353 NA coding protein psRNATarget
JB164580.1
ncRNA:24   GGGUCGAUCUAGGUUGCUAGCCUU   1
  =||||=||||||||||||||||||
targets:94   UCCAGUUAGAUCCAACGAUCGGAA   117

1.0 Sequence 2244 from Patent EP2559767 NA coding protein psRNATarget
AK100297.1
ncRNA:24   GGGUCGAUCUAGGUUGCUAGCCUU   1
  |=|||||||||||||||||||*||
targets:1348   CUCAGCUAGAUCCAACGAUCGAAA   1371

1.5 Oryza sativa Japonica Group cDNA clone:J023077B14, full insert sequence NA coding protein psRNATarget
XM_015793616.1
ncRNA:24   GGGUCGAUCUAGGUUGCUAGCCUU   1
  |=|||||||||||||||||||*||
targets:1523   CUCAGCUAGAUCCAACGAUCGAAA   1546

1.5 PREDICTED: Oryza sativa Japonica Group probable auxin efflux carrier component 4 (LOC4346116), mRNA probable auxin efflux carrier component 4(LOC4346116) coding protein psRNATarget
AK103106.1
ncRNA:24   GGGUC--GAUCUAGGUUGCUAGCCUU   1
  |*|||--|||||||||||||||||||
targets:1479   CACAGUACUAGAUCCAACGAUCGGAA   1504

2.5 Oryza sativa Japonica Group cDNA clone:J033118O22, full insert sequence NA coding protein psRNATarget
XM_015765802.1
ncRNA:24   GGGUC--GAUCUAGGUUGCUAGCCUU   1
  |*|||--|||||||||||||||||||
targets:1478   CACAGUACUAGAUCCAACGAUCGGAA   1503

2.5 PREDICTED: Oryza sativa Japonica Group polygalacturonase (LOC4326679), mRNA polygalacturonase(LOC4326679) coding protein psRNATarget
XM_015786123.1
ncRNA:24   GGGU--CGAUCUAGGUUGCUAGCCUU   1
  **||--|=||||||||||||||||||
targets:701   GGCAUCGUUAGAUCCAACGAUCGGAA   726

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340617 (LOC4340617), mRNA uncharacterized LOC4340617(LOC4340617) coding protein psRNATarget
AK287529.1
ncRNA:24   GGGU--CGAUCUAGGUUGCUAGCCUU   1
  **||--|=||||||||||||||||||
targets:212   GGCAUCGUUAGAUCCAACGAUCGGAA   237

1.0 Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence NA coding protein psRNATarget
AK240791.1
ncRNA:24   GGGU--CGAUCUAGGUUGCUAGCCUU   1
  **||--|=||||||||||||||||||
targets:212   GGCAUCGUUAGAUCCAACGAUCGGAA   237

1.0 Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence NA coding protein psRNATarget
XM_015778221.1
ncRNA:24   GGGU--CGAUCUAGGUUGCUAGCCUU   1
  =*||--|=||||||||||||||||||
targets:3050   UGCAUUGUUAGAUCCAACGAUCGGAA   3075

1.0 PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 3-like (LOC107278106), transcript variant X2, mRNA wall-associated receptor kinase 3-like(LOC107278106) coding protein psRNATarget
XM_015778220.1
ncRNA:24   GGGU--CGAUCUAGGUUGCUAGCCUU   1
  =*||--|=||||||||||||||||||
targets:3101   UGCAUUGUUAGAUCCAACGAUCGGAA   3126

1.0 PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 3-like (LOC107278106), transcript variant X1, mRNA wall-associated receptor kinase 3-like(LOC107278106) coding protein psRNATarget
AK108234.1
ncRNA:24   GGGUCGAUCUAGGUUGCUAGCCUU   1
  ****|=||||||||||||||||||
targets:490   GGAUGUUAGAUCCAACGAUCGGAA   513

1.0 Oryza sativa Japonica Group cDNA clone:002-140-G06, full insert sequence NA coding protein psRNATarget
XM_015783108.1
ncRNA:24   GGGU--CGAUCUAGGUUGCUAGCCUU   1
  =*||--|=||||||=|||||||||||
targets:955   UACACUGUUAGAUCUAACGAUCGGAA   980

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277789 (LOC107277789), mRNA uncharacterized LOC107277789(LOC107277789) coding protein psRNATarget
XM_015779289.1
ncRNA:24   GGGU--CGAUCUAGGUUGCUAGCCUU   1
  **||--|=|||||||||||||||*||
targets:1541   GACAUUGUUAGAUCCAACGAUCGAAA   1566

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X3, mRNA uncharacterized LOC9266029(LOC9266029) coding protein psRNATarget
XM_015779283.1
ncRNA:24   GGGU--CGAUCUAGGUUGCUAGCCUU   1
  **||--|=|||||||||||||||*||
targets:1732   GACAUUGUUAGAUCCAACGAUCGAAA   1757

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X2, mRNA uncharacterized LOC9266029(LOC9266029) coding protein psRNATarget
XM_015779276.1
ncRNA:24   GGGU--CGAUCUAGGUUGCUAGCCUU   1
  **||--|=|||||||||||||||*||
targets:1739   GACAUUGUUAGAUCCAACGAUCGAAA   1764

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X1, mRNA uncharacterized LOC9266029(LOC9266029) coding protein psRNATarget
AK288361.1
ncRNA:24   GGGUCGAUCUAGGUUGCUAGCCUU   1
  =*=**=|||||||||||||=||||
targets:2980   UAUUUUUAGAUCCAACGAUUGGAA   3003

2.5 Oryza sativa Japonica Group cDNA, clone: J090025B15, full insert sequence NA coding protein psRNATarget
HI404330.1
ncRNA:24   GGGUCGAUCUAGGUUGCUAGCCUU   1
  =*=*|=||||||||||*|||||||
targets:45   UAUUGUUAGAUCCAACAAUCGGAA   68

2.5 Sequence 2455 from Patent EP2074227 NA coding protein psRNATarget
LQ236460.1
ncRNA:24   GGGUCGAUCUAGGUUGCUAGCCUU   1
  =*=*|=||||||||||*|||||||
targets:45   UAUUGUUAGAUCCAACAAUCGGAA   68

2.5 Sequence 2455 from Patent EP2985353 NA coding protein psRNATarget
JB164791.1
ncRNA:24   GGGUCGAUCUAGGUUGCUAGCCUU   1
  =*=*|=||||||||||*|||||||
targets:45   UAUUGUUAGAUCCAACAAUCGGAA   68

2.5 Sequence 2455 from Patent EP2559767 NA coding protein psRNATarget
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