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BaseInfo

ncRNA ID	novel_osa_miR3295
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:1287057-1287188 [+]
Reference genome	IRGSP-1.0
Source	SRR2040387
Length	25
Mature sequence(if miRNA)	1 - UUGACAAUGUAAGACUUUCUAGCAU - 25
Stem-loop(if miRNA)	--  G                               U   U               C        U   UU ACAAUGUAAGACUUUCUAGCAUUGUCCACAU CAU UAGAUGUUAAUGAAU UAGACAUA G   || ||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||   AA UGUUACAUUCUGAAAGAUCGUAACAGGUGUA GUA AUCUACAAUUACUUA AUUUGUGU U CA  G                               U   U               A        A
Stem-loop sequence	UUGACAAUGUAAGACUUUCUAGCAUUGUCCACAUUCAUUUAGAUGUUAAUGAAUCUAGACAUAUGUAUGUGUUUAAAUUCAUUAACAUCUAUAUGUAUGUGGACAAUGCUAGAAAGUCUUACAUUGUGAAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK059715.1	ncRNA:25   UACGAUCUUUCAGAAUGUAACAGUU   1   ||||||||||||||||||||||*|| targets:125   AUGCUAGAAAGUCUUACAUUGUGAA   149 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-032-F10, full insert sequence	NA	coding protein	psRNATarget
CT836330.1	ncRNA:25   UACGAUCUUUCAGAAUGUAACAGUU   1   ||||||||||||||||||||||*|| targets:915   AUGCUAGAAAGUCUUACAUUGUGAA   939 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN072K19, full insert sequence	NA	coding protein	psRNATarget
AK241537.1	ncRNA:25   UACGAUCUUUCAGAAUGUAACAGUU   1   ||||||||||||||||||||||*|| targets:917   AUGCUAGAAAGUCUUACAUUGUGAA   941 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065173J04, full insert sequence	NA	coding protein	psRNATarget
XM_015795868.1	ncRNA:25   UACGAUCUUUCAGAAUGUAACAGUU   1   ||||||||||||||||||||||*|| targets:1255   AUGCUAGAAAGUCUUACAUUGUGAA   1279 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277671 (LOC107277671), mRNA	uncharacterized LOC107277671(LOC107277671)	coding protein	psRNATarget
AK072517.1	ncRNA:25   UACGAUCUUUCAGAAUGUAACAGUU   1   ||||||||||||||||||||||*|| targets:1417   AUGCUAGAAAGUCUUACAUUGUGAA   1441 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023133J02, full insert sequence	NA	coding protein	psRNATarget
AK288932.1	ncRNA:25   UACGAUCUUUCAGAAUGUAACAGUU   1   ||||||||||||||||||||||*|| targets:3066   AUGCUAGAAAGUCUUACAUUGUGAA   3090 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090082H22, full insert sequence	NA	coding protein	psRNATarget
AK103229.1	ncRNA:25   UACGAUCUUUCAGAAUGUAACAGUU   1   |||=||||||||||||||||||*|| targets:499   AUGUUAGAAAGUCUUACAUUGUGAA   523 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033123D06, full insert sequence	NA	coding protein	psRNATarget
AK067660.1	ncRNA:25   UACGAUCUUUCAGAAUGUAACAGUU   1   |||=||||||||||||||||||*|| targets:2796   AUGUUAGAAAGUCUUACAUUGUGAA   2820 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013116C06, full insert sequence	NA	coding protein	psRNATarget
AK101666.1	ncRNA:25   UACGAUCUUUCAGAAUGUAACAGUU   1   =|||||||||||||||||||||*|| targets:1693   GUGCUAGAAAGUCUUACAUUGUGAA   1717 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033057N11, full insert sequence	NA	coding protein	psRNATarget
AK119344.1	ncRNA:25   UACGAUCUUUCAGAAUGUAACAGUU   1   |||*||||||||||||||||||*|| targets:1258   AUGGUAGAAAGUCUUACAUUGUGAA   1282 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-131-E01, full insert sequence	NA	coding protein	psRNATarget
AK071927.1	ncRNA:25   UACGAUCUUUCAGAAUGUAACAGUU   1   ||||||||||*|||||||||||*|| targets:2363   AUGCUAGAAAAUCUUACAUUGUAAA   2387 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013069M04, full insert sequence	NA	coding protein	psRNATarget
XM_015785143.1	ncRNA:25   UACGAUCUUUCAGAAUGUAACAGUU   1   |*||||||||||||||||||||*|| targets:1811   ACGCUAGAAAGUCUUACAUUGUGAA   1835 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266451 (LOC9266451), mRNA	uncharacterized LOC9266451(LOC9266451)	coding protein	psRNATarget
XM_015786027.1	ncRNA:25   UACGAUCUUUCAGAAUGUAACAGUU   1   |||||||||||*||||||||||*|| targets:4334   AUGCUAGAAAGCCUUACAUUGUGAA   4358 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ABC transporter C family member 8 (LOC9267441), mRNA	ABC transporter C family member 8(LOC9267441)	coding protein	psRNATarget
XM_015766553.1	ncRNA:25   UACGAUCUUUCAGAAUGUAACAGUU   1   |*||||||||||||||||||||*|| targets:622   ACGCUAGAAAGUCUUACAUUGUGAA   646 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X7, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766552.1	ncRNA:25   UACGAUCUUUCAGAAUGUAACAGUU   1   |*||||||||||||||||||||*|| targets:1812   ACGCUAGAAAGUCUUACAUUGUGAA   1836 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X6, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766549.1	ncRNA:25   UACGAUCUUUCAGAAUGUAACAGUU   1   |*||||||||||||||||||||*|| targets:2426   ACGCUAGAAAGUCUUACAUUGUGAA   2450 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X3, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766551.1	ncRNA:25   UACGAUCUUUCAGAAUGUAACAGUU   1   |*||||||||||||||||||||*|| targets:2792   ACGCUAGAAAGUCUUACAUUGUGAA   2816 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X5, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766550.1	ncRNA:25   UACGAUCUUUCAGAAUGUAACAGUU   1   |*||||||||||||||||||||*|| targets:2792   ACGCUAGAAAGUCUUACAUUGUGAA   2816 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X4, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766546.1	ncRNA:25   UACGAUCUUUCAGAAUGUAACAGUU   1   |*||||||||||||||||||||*|| targets:2792   ACGCUAGAAAGUCUUACAUUGUGAA   2816 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X1, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015779139.1	ncRNA:25   UACGAUCUUUCAGAAUGUAACAGUU   1   |||*||*|||||||||||||||*|| targets:1010   AUGGUAAAAAGUCUUACAUUGUGAA   1034 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group fasciclin-like arabinogalactan protein 7 (LOC4336128), mRNA	fasciclin-like arabinogalactan protein 7(LOC4336128)	coding protein	psRNATarget
AK110545.1	ncRNA:25   UACGAUCUUUCAGAAUGUAACAGUU   1   |||*||*|||||||||||||||*|| targets:1016   AUGGUAAAAAGUCUUACAUUGUGAA   1040 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-168-B08, full insert sequence	NA	coding protein	psRNATarget