Search result

BaseInfo

ncRNA ID	novel_osa_miR3294
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:11647735-11647821 [+]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1556020
Length	22
Mature sequence(if miRNA)	1 - GAGAAUCUGGACUGUUUGGCAC - 22
Stem-loop(if miRNA)	--      CU  -A            A        -    G AA   GAGAAU  GG  CUGUUUGGCACA CUUCGGCU CCAG U  G   ||||||  ||  |||||||||||| |||||||| |||| |  U   CUUUUA  CC  GGUAAACCGUGU GAGGUCGA GGUU A  U AU      UU  AA            C        A    G GG
Stem-loop sequence	GAGAAUCUGGACUGUUUGGCACAACUUCGGCUCCAGGUAAGUUGGAGUUGGAAGCUGGAGCUGUGCCAAAUGGAACCUUAUUUUCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015777475.1	ncRNA:22   CACGGUUUGUCAGGUCUAAGAG   1   ***|=||||||||||*|||||| targets:1620   CCUCUAAACAGUCCAAAUUCUC   1641 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group myosin-12 (LOC4334102), transcript variant X3, mRNA	myosin-12(LOC4334102)	coding protein	psRNATarget
AY374515.1	ncRNA:22   CACGGUUUGUCAGGUCUAAGAG   1   ***|=||||||||||*|||||| targets:1787   CCUCUAAACAGUCCAAAUUCUC   1808 Target Full Sequence	2.5	Oryza sativa (japonica cultivar-group) myosin heavy chain class XI E1 protein (MyoXIE1) mRNA, complete cds	NA	coding protein	psRNATarget
XM_015777474.1	ncRNA:22   CACGGUUUGUCAGGUCUAAGAG   1   ***|=||||||||||*|||||| targets:2020   CCUCUAAACAGUCCAAAUUCUC   2041 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group myosin-12 (LOC4334102), transcript variant X2, mRNA	myosin-12(LOC4334102)	coding protein	psRNATarget
AY374517.1	ncRNA:22   CACGGUUUGUCAGGUCUAAGAG   1   ***|=||||||||||*|||||| targets:1787   CCUCUAAACAGUCCAAAUUCUC   1808 Target Full Sequence	2.5	Oryza sativa (japonica cultivar-group) myosin heavy chain class XI E3 protein (MyoXIE3) mRNA, complete cds	NA	coding protein	psRNATarget
XM_015777473.1	ncRNA:22   CACGGUUUGUCAGGUCUAAGAG   1   ***|=||||||||||*|||||| targets:2019   CCUCUAAACAGUCCAAAUUCUC   2040 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group myosin-12 (LOC4334102), transcript variant X1, mRNA	myosin-12(LOC4334102)	coding protein	psRNATarget
AY374516.1	ncRNA:22   CACGGUUUGUCAGGUCUAAGAG   1   ***|=||||||||||*|||||| targets:1787   CCUCUAAACAGUCCAAAUUCUC   1808 Target Full Sequence	2.5	Oryza sativa (japonica cultivar-group) myosin heavy chain class XI E2 protein (MyoXIE2) mRNA, complete cds	NA	coding protein	psRNATarget