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BaseInfo

ncRNA ID	novel_osa_miR3292
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:21370923-21370991 [+]
Reference genome	IRGSP-1.0
Source	SRR2040387;SRR2040397
Length	21
Mature sequence(if miRNA)	1 - AUUGUUUCCGAUCGUUGGAUC - 21
Stem-loop(if miRNA)	--                    -CU  CUA   AU   AUUGUUUCCGAUCGUUGGAU   AG   GCC  G   ||||||||||||||||||||   ||   |||   UAGCAAAGGCUAGCAAUCUA   UC   CGG  A UU                    AAU  UUA   AU
Stem-loop sequence	AUUGUUUCCGAUCGUUGGAUCUAGCUAGCCAUGAUAGGCAUUCUUAAAUCUAACGAUCGGAAACGAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI404119.1	ncRNA:21   CUAGGUUGCUAGCCUUUGUUA   1   |||||||||||||||||=||| targets:102   GAUCCAACGAUCGGAAAUAAU   122 Target Full Sequence	1.5	Sequence 2244 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236249.1	ncRNA:21   CUAGGUUGCUAGCCUUUGUUA   1   |||||||||||||||||=||| targets:102   GAUCCAACGAUCGGAAAUAAU   122 Target Full Sequence	1.5	Sequence 2244 from Patent EP2985353	NA	coding protein	psRNATarget
JB164580.1	ncRNA:21   CUAGGUUGCUAGCCUUUGUUA   1   |||||||||||||||||=||| targets:102   GAUCCAACGAUCGGAAAUAAU   122 Target Full Sequence	1.5	Sequence 2244 from Patent EP2559767	NA	coding protein	psRNATarget
AK108234.1	ncRNA:21   CUAGGUUGCUAGCCUUUGUUA   1   ||||||||||||||||||=|| targets:498   GAUCCAACGAUCGGAAACGAU   518 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-140-G06, full insert sequence	NA	coding protein	psRNATarget
AK103106.1	ncRNA:21   CUAGGUUGCUAGCCUUUGUUA   1   |||||||||||||||||=||| targets:1489   GAUCCAACGAUCGGAAAUAAU   1509 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033118O22, full insert sequence	NA	coding protein	psRNATarget
XM_015765802.1	ncRNA:21   CUAGGUUGCUAGCCUUUGUUA   1   |||||||||||||||||=||| targets:1488   GAUCCAACGAUCGGAAAUAAU   1508 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group polygalacturonase (LOC4326679), mRNA	polygalacturonase(LOC4326679)	coding protein	psRNATarget
XM_015778221.1	ncRNA:21   CUAGGUUGCUAGCCUUUGUUA   1   ||||||||||||||||||=|| targets:3060   GAUCCAACGAUCGGAAACGAU   3080 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 3-like (LOC107278106), transcript variant X2, mRNA	wall-associated receptor kinase 3-like(LOC107278106)	coding protein	psRNATarget
XM_015778220.1	ncRNA:21   CUAGGUUGCUAGCCUUUGUUA   1   ||||||||||||||||||=|| targets:3111   GAUCCAACGAUCGGAAACGAU   3131 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 3-like (LOC107278106), transcript variant X1, mRNA	wall-associated receptor kinase 3-like(LOC107278106)	coding protein	psRNATarget
AK063705.1	ncRNA:21   CUAGGUUGCUAGCCUUUGUUA   1   ||||||=||||=||||||||| targets:575   GAUCCAGCGAUUGGAAACAAU   595 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-119-H03, full insert sequence	NA	coding protein	psRNATarget
XM_015783108.1	ncRNA:21   CUAGGUUGCUAGCCUUUGUUA   1   ||||=|||||||||||||=|| targets:965   GAUCUAACGAUCGGAAACGAU   985 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277789 (LOC107277789), mRNA	uncharacterized LOC107277789(LOC107277789)	coding protein	psRNATarget
EF626940.1	ncRNA:21   CUAGGUUGCUAGCCUUUGUUA   1   ||||||=||||=||||||||| targets:1081   GAUCCAGCGAUUGGAAACAAU   1101 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) WIP4 (WIP4) mRNA, complete cds	NA	coding protein	psRNATarget
XM_015755547.1	ncRNA:21   CUAGGUUGCUAGCCUUUGUUA   1   ||||||=||||=||||||||| targets:1556   GAUCCAGCGAUUGGAAACAAU   1576 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group zinc finger protein WIP2 (LOC4347420), mRNA	zinc finger protein WIP2(LOC4347420)	coding protein	psRNATarget
JB163994.1	ncRNA:21   CUAGGUUGCUAGCCUUUGUUA   1   ||*|||||||||||||||||| targets:58   GAACCAACGAUCGGAAACAAU   78 Target Full Sequence	1.0	Sequence 1658 from Patent EP2559767	NA	coding protein	psRNATarget
HI403533.1	ncRNA:21   CUAGGUUGCUAGCCUUUGUUA   1   ||*|||||||||||||||||| targets:58   GAACCAACGAUCGGAAACAAU   78 Target Full Sequence	1.0	Sequence 1658 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235663.1	ncRNA:21   CUAGGUUGCUAGCCUUUGUUA   1   ||*|||||||||||||||||| targets:58   GAACCAACGAUCGGAAACAAU   78 Target Full Sequence	1.0	Sequence 1658 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015779655.1	ncRNA:21   CUAGGUUGCUAGCCUUUGUUA   1   *|||||||||||||||||=|| targets:1555   AAUCCAACGAUCGGAAACGAU   1575 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280684 (LOC107280684), transcript variant X1, mRNA	uncharacterized LOC107280684(LOC107280684)	coding protein	psRNATarget