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BaseInfo

ncRNA ID	novel_osa_miR3291
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:10519632-10519680 [+]
Reference genome	IRGSP-1.0
Source	SRR2040387
Length	24
Mature sequence(if miRNA)	1 - GUUACCAAUCGGGACUAAAGAUCC - 24
Stem-loop(if miRNA)	--GU                  AU     UACCAAUCGGGACUAAAG  C     ||||||||||||||||||  C     GUGGUUGGUCCUGAUUUC  U CAUC                  AA
Stem-loop sequence	GUUACCAAUCGGGACUAAAGAUCCUAACUUUAGUCCUGGUUGGUGCUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015779829.1	ncRNA:24   CCUAGAAAUCAGGGCUAACCAUUG   1   |||||||||||||||=|||||||| targets:1699   GGAUCUUUAGUCCCGGUUGGUAAC   1722 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
HI404521.1	ncRNA:24   CCUAGAAAUCAGGGCUAACCAUUG   1   *||||||||||||||||||||||= targets:122   UGAUCUUUAGUCCCGAUUGGUAAU   145 Target Full Sequence	1.0	Sequence 2646 from Patent EP2074227	NA	coding protein	psRNATarget
JB164982.1	ncRNA:24   CCUAGAAAUCAGGGCUAACCAUUG   1   *||||||||||||||||||||||= targets:122   UGAUCUUUAGUCCCGAUUGGUAAU   145 Target Full Sequence	1.0	Sequence 2646 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236651.1	ncRNA:24   CCUAGAAAUCAGGGCUAACCAUUG   1   *||||||||||||||||||||||= targets:122   UGAUCUUUAGUCCCGAUUGGUAAU   145 Target Full Sequence	1.0	Sequence 2646 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015755256.1	ncRNA:24   CCUAGAAAUCAGGGCUAACCAUUG   1   *||||||||||||||=|||||||| targets:142   UGAUCUUUAGUCCCGGUUGGUAAC   165 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346665 (LOC4346665), transcript variant X2, mRNA	uncharacterized LOC4346665(LOC4346665)	coding protein	psRNATarget
AK289098.1	ncRNA:24   CCUAGAAAUCAGGGCUAACCAUUG   1   *||||||||||||||=|||||||| targets:237   AGAUCUUUAGUCCCGGUUGGUAAC   260 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK288734.1	ncRNA:24   CCUAGAAAUCAGGGCUAACCAUUG   1   *||||||||||||||=|||||||| targets:46   UGAUCUUUAGUCCCGGUUGGUAAC   69 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090063I24, full insert sequence	NA	coding protein	psRNATarget
AK288224.1	ncRNA:24   CCUAGAAAUCAGGGCUAACCAUUG   1   **|***|||||||||=|||||||| targets:1842   AAAAACUUAGUCCCGGUUGGUAAC   1865 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090012B15, full insert sequence	NA	coding protein	psRNATarget
AK288438.1	ncRNA:24   CCUAGAAAUCAGGGCUAACCAUUG   1   **|||||||||||||=|||||||| targets:2362   AAAUCUUUAGUCCCGGUUGGUAAC   2385 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK288438.1	ncRNA:24   CCUAGAAAUCAGGGCUAACCAUUG   1   *|||||||||*||||=|||||||| targets:1310   UGAUCUUUAGCCCCGGUUGGUAAC   1333 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK288598.1	ncRNA:24   CCUAGAAAUCAGGGCUAACCAUUG   1   |||-|||||||||||=|||||||* targets:943   GGA-CUUUAGUCCCGGUUGGUAAG   965 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090051P05, full insert sequence	NA	coding protein	psRNATarget