Search result

BaseInfo

ncRNA ID	novel_osa_miR3289
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:10136844-10136912 [-]
Reference genome	IRGSP-1.0
Source	SRR2040387;SRR2890846
Length	24
Mature sequence(if miRNA)	46 - AAUAUAAGAAUUUAGAACCGGAUG - 69
Stem-loop(if miRNA)	--               AACC    GCGAC    C   AAUAUAAGAAUUUAG    GGAU     AUAU A   |||||||||||||||    ||||     ||||   UUAUAUUCUUGGGUU    UCUA     UAUA U UU               -AAU    AAGAU    A
Stem-loop sequence	AAUAUAAGAAUUUAGAACCGGAUGCGACAUAUCAUAAUAUUAGAAAUCUUAAUUGGGUUCUUAUAUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK242602.1	ncRNA:24   GUAGGCCAAGAUUUAAGAAUAUAA   1   ||||||||||||=||||||||||| targets:3815   CAUCCGGUUCUAGAUUCUUAUAUU   3838 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090014K11, full insert sequence	NA	coding protein	psRNATarget
AK100681.1	ncRNA:24   GUAGGCCAAGAUUUAAGAAUAUAA   1   =||=*||*|=|||||||||||||* targets:995   UAUUAGGGUUUAAAUUCUUAUAUC   1018 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023113K09, full insert sequence	NA	coding protein	psRNATarget
CT831155.1	ncRNA:24   GUAGGCCAAGAUUUAAGAAUAUAA   1   =||=*||*|=|||||||||||||* targets:981   UAUUAGGGUUUAAAUUCUUAUAUC   1004 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN008J23, full insert sequence	NA	coding protein	psRNATarget