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BaseInfo

ncRNA ID	novel_osa_miR3287
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:34041457-34041605 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1555749;SRR2097778;SRR1555751;SRR2099568;SRR2099745;SRR1556011;SRR1556016;SRR1556018;SRR1298766;SRR1556020
Length	24
Mature sequence(if miRNA)	1 - AAACGUCUUAUAACUUGAAACGGA - 24
Stem-loop(if miRNA)	--        A                     A           -CUA   C            A      GACA   CGUUUUAG UUAUAAGACGUUUUGACUUUG UCAAAGUCAAA    UUU AAGUUUGACUAG UUUAUA    A   |||||||| ||||||||||||||||||||| |||||||||||    ||| |||||||||||| ||||||   GCAAAGUU AAUAUUCUGCAAAACUGAAAC AGUUUCAGUUU    AAA UUCAAACUGAUU AAAUAU    A AG        C                     C           AACG   A            C      AUAU
Stem-loop sequence	CGUUUUAGAUUAUAAGACGUUUUGACUUUGAUCAAAGUCAAACUAUUUCAAGUUUGACUAGAUUUAUAGACAAAUAUAUAUAAACUUAGUCAAACUUAAAAGCAAUUUGACUUUGACCAAAGUCAAAACGUCUUAUAACUUGAAACGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288358.1	ncRNA:24   AGGCAAAGUUCAAUAUUCUGCAAA   1   |||||||||=|||||||||||||| targets:868   UCCGUUUCAGGUUAUAAGACGUUU   891 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090024L19, full insert sequence	NA	coding protein	psRNATarget
AK288994.1	ncRNA:24   AGGCAAAGUUCAAUAUUCUGCAAA   1   |||||||||=|||||||||||||| targets:1335   UCCGUUUCAGGUUAUAAGACGUUU   1358 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090087P03, full insert sequence	NA	coding protein	psRNATarget
AK288417.1	ncRNA:24   AGGCAAAGUUCAAUAUUCUGCAAA   1   |||||||||=|||||||||||||| targets:3055   UCCGUUUCAGGUUAUAAGACGUUU   3078 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090031J18, full insert sequence	NA	coding protein	psRNATarget
XM_015774872.1	ncRNA:24   AGGCAAAGUUCAAUAUUCUGCAAA   1   |||||||||=|||||||||||||| targets:590   UCCGUUUCAGGUUAUAAGACGUUU   613 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4333037 (LOC4333037), transcript variant X2, mRNA	uncharacterized LOC4333037(LOC4333037)	coding protein	psRNATarget
CT835003.1	ncRNA:24   AGGCAAAGUUCAAUAUUCUGCAAA   1   |||||||||=|||||||||||||| targets:168   UCCGUUUCAGGUUAUAAGACGUUU   191 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN054K08, full insert sequence	NA	coding protein	psRNATarget
AK288928.1	ncRNA:24   AGGCAAAGUUCAAUAUUCUGCAAA   1   |||||||||=|||||||||=|||| targets:1194   UCCGUUUCAGGUUAUAAGAUGUUU   1217 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090082F16, full insert sequence	NA	coding protein	psRNATarget
AK288527.1	ncRNA:24   AGGCAAAGUUCAAUAUUCUGCAAA   1   ||||||||==|||||||||||||| targets:568   UCCGUUUCGGGUUAUAAGACGUUU   591 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090044J18, full insert sequence	NA	coding protein	psRNATarget
AK120483.1	ncRNA:24   AGGCAAAGUUCAAUAUUCUGCAAA   1   |||||||||=|||=|||||||||| targets:2301   UCCGUUUCAGGUUGUAAGACGUUU   2324 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013112K02, full insert sequence	NA	coding protein	psRNATarget
AK106793.1	ncRNA:24   AGGCAAAGUUCAAUAUUCUGCAAA   1   |||||||=|=|||||||||||||| targets:173   UCCGUUUUAGGUUAUAAGACGUUU   196 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-116-A11, full insert sequence	NA	coding protein	psRNATarget
AK288635.1	ncRNA:24   AGGCAAAGUUCAAUAUUCUGCAAA   1   |||||||||=|||||||||=|||| targets:374   UCCGUUUCAGGUUAUAAGAUGUUU   397 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090055J05, full insert sequence	NA	coding protein	psRNATarget
AK069806.1	ncRNA:24   AGGCAAAGUUCAAUAUUCUGCAAA   1   |==||||||=|||||||||||||| targets:1411   UUUGUUUCAGGUUAUAAGACGUUU   1434 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023030P11, full insert sequence	NA	coding protein	psRNATarget
XM_015790283.1	ncRNA:24   AGGCAAAGUUCAAUAUUCUGCAAA   1   |||||||||=||||*||||||||| targets:1262   UCCGUUUCAGGUUACAAGACGUUU   1285 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group anthocyanidin reductase (LOC4343827), mRNA	anthocyanidin reductase(LOC4343827)	coding protein	psRNATarget
XM_015794148.1	ncRNA:24   AGGCAAAGUUCAAUAUUCUGCAAA   1   |||||||||=|||||||*|||||| targets:1052   UCCGUUUCAGGUUAUAAUACGUUU   1075 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group clavaminate synthase-like protein At3g21360 (LOC107275812), mRNA	clavaminate synthase-like protein At3g21360(LOC107275812)	coding protein	psRNATarget
XM_015790873.1	ncRNA:24   AGGCAAAGUUCAAUAUUCUGCAAA   1   |||||||||=|||||||*|||||| targets:853   UCCGUUUCAGGUUAUAAUACGUUU   876 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4343452 (LOC4343452), mRNA	uncharacterized LOC4343452(LOC4343452)	coding protein	psRNATarget
AK065615.1	ncRNA:24   AGGCAAAGUUCAAUAUUCUGCAAA   1   ||=||||||=|*|||||||||||| targets:2817   UCUGUUUCAGGCUAUAAGACGUUU   2840 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013026B17, full insert sequence	NA	coding protein	psRNATarget
XM_015793424.1	ncRNA:24   AGGCAAAGUUCAAUAUUCUGCAAA   1   |==*|||||=|||||||||||||| targets:1653   UUUUUUUCAGGUUAUAAGACGUUU   1676 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 85A2 (LOC4345521), mRNA	UDP-glycosyltransferase 85A2(LOC4345521)	coding protein	psRNATarget
XM_015760856.1	ncRNA:24   AGGCAAAGUUCAAUAUUCUGCAAA   1   ||||||*||*|||||||||||||| targets:1338   UCCGUUCCAUGUUAUAAGACGUUU   1361 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group BTB/POZ and MATH domain-containing protein 1 (LOC4350951), mRNA	BTB/POZ and MATH domain-containing protein 1(LOC4350951)	coding protein	psRNATarget
AK288313.1	ncRNA:24   AGGCAAAGUUCAAUAUUCUGCAAA   1   |||*|||||=|||||||*|||||| targets:822   UCCAUUUCAGGUUAUAAAACGUUU   845 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090021D10, full insert sequence	NA	coding protein	psRNATarget
XM_015758786.1	ncRNA:24   AGGCAAAGUUCAAUAUUCUGCAAA   1   |*=||||||*|||||||||||||| targets:649   UGUGUUUCACGUUAUAAGACGUUU   672 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4348279 (LOC4348279), transcript variant X2, mRNA	uncharacterized LOC4348279(LOC4348279)	coding protein	psRNATarget
AK111574.1	ncRNA:24   AGGCAAAGUUCAAUAUUCUGCAAA   1   *||||||||**||||||||||||| targets:2012   ACCGUUUCACAUUAUAAGACGUUU   2035 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013074D22, full insert sequence	NA	coding protein	psRNATarget
CT837804.1	ncRNA:24   AGGCAAAGUUCAAUAUUCUGCAAA   1   ||=*|||||=||||||||||*||| targets:854   UCUAUUUCAGGUUAUAAGACUUUU   877 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA115N24, full insert sequence	NA	coding protein	psRNATarget
AK065071.1	ncRNA:24   AGG-------CAAAGUUCAAUAUUCUGCAAA   1   |||-------||||||=|||||||*|||||| targets:2340   UCCAUUGCAGGUUUCAGGUUAUAAAACGUUU   2370 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013001K07, full insert sequence	NA	coding protein	psRNATarget
XM_015785839.1	ncRNA:24   AG-GCAAAGUUCAAUAUUCUGCAAA   1   ||-=||||||*|||||||*|||||| targets:1537   UCAUGUUUCAUGUUAUAAAACGUUU   1561 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group short-chain dehydrogenase TIC 32, chloroplastic (LOC4339991), transcript variant X1, mRNA	short-chain dehydrogenase TIC 32, chloroplastic(LOC4339991)	coding protein	psRNATarget
AK243431.1	ncRNA:24   AG-GCAAAGUUCAAUAUUCUGCAAA   1   ||-=||||||*|||||||*|||||| targets:1469   UCAUGUUUCAUGUUAUAAAACGUUU   1493 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J100067O21, full insert sequence	NA	coding protein	psRNATarget
XM_015785840.1	ncRNA:24   AG-GCAAAGUUCAAUAUUCUGCAAA   1   ||-=||||||*|||||||*|||||| targets:1465   UCAUGUUUCAUGUUAUAAAACGUUU   1489 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group short-chain dehydrogenase TIC 32, chloroplastic (LOC4339991), transcript variant X2, mRNA	short-chain dehydrogenase TIC 32, chloroplastic(LOC4339991)	coding protein	psRNATarget