Search result

BaseInfo

ncRNA ID	novel_osa_miR3286
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:19204130-19204273 [+]
Reference genome	IRGSP-1.0
Source	SRR2040387;SRR2098822;SRR2098823;SRR2099567;SRR2857728
Length	22
Mature sequence(if miRNA)	1 - ACCAAAUUUCAAGUUCAAACUC - 22
Stem-loop(if miRNA)	--            G              CA      - U        A                     AAC   ACCAAAUUUCAA UUCAAACUCAACUU  UUUAGG G AACAAAAA GACAAAUUUUAGGUGAAUAGU   A   |||||||||||| ||||||||||||||  |||||| | |||||||| |||||||||||||||||||||   UGGUUUAGAGUU AGGUUUGAGUUGAA  AAAUUC C UUGUUUUU CUGUUUAAAGUCCACUUAUCA   U AG            G              AC      U U        -                     CAG
Stem-loop sequence	ACCAAAUUUCAAGUUCAAACUCAACUUCAUUUAGGGUAACAAAAAAGACAAAUUUUAGGUGAAUAGUAACAUGACACUAUUCACCUGAAAUUUGUCUUUUUGUUUCUCUUAAACAAAGUUGAGUUUGGAGUUGAGAUUUGGUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403798.1	ncRNA:22   CUCAAACUUGAACUUUAAACCA   1   |||||||=||||||=||||||| targets:124   GAGUUUGGACUUGAGAUUUGGU   145 Target Full Sequence	2.5	Sequence 1923 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235928.1	ncRNA:22   CUCAAACUUGAACUUUAAACCA   1   |||||||=||||||=||||||| targets:124   GAGUUUGGACUUGAGAUUUGGU   145 Target Full Sequence	2.5	Sequence 1923 from Patent EP2985353	NA	coding protein	psRNATarget
JB164259.1	ncRNA:22   CUCAAACUUGAACUUUAAACCA   1   |||||||=||||||=||||||| targets:124   GAGUUUGGACUUGAGAUUUGGU   145 Target Full Sequence	2.5	Sequence 1923 from Patent EP2559767	NA	coding protein	psRNATarget
JB164086.1	ncRNA:22   CUCAAACUUGAACUUUAAACCA   1   |||||||=||||||=||||||| targets:151   GAGUUUGGACUUGAGAUUUGGU   172 Target Full Sequence	2.5	Sequence 1750 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235755.1	ncRNA:22   CUCAAACUUGAACUUUAAACCA   1   |||||||=||||||=||||||| targets:151   GAGUUUGGACUUGAGAUUUGGU   172 Target Full Sequence	2.5	Sequence 1750 from Patent EP2985353	NA	coding protein	psRNATarget
HI403625.1	ncRNA:22   CUCAAACUUGAACUUUAAACCA   1   |||||||=||||||=||||||| targets:151   GAGUUUGGACUUGAGAUUUGGU   172 Target Full Sequence	2.5	Sequence 1750 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015793144.1	ncRNA:22   CUCAAACUUGAACUUUAAACCA   1   |=||||||||||||=||||||| targets:1257   GGGUUUGAACUUGAGAUUUGGU   1278 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic (LOC4345581), mRNA	protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic(LOC4345581)	coding protein	psRNATarget
AK287885.1	ncRNA:22   CUCAAACUUGAACUUUAAACCA   1   |=||||||||||||=||||||| targets:1214   GGGUUUGAACUUGAGAUUUGGU   1235 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065207M01, full insert sequence	NA	coding protein	psRNATarget
CT829929.1	ncRNA:22   CUCAAACUUGAACUUUAAACCA   1   ||-|||||||||||=||||||| targets:1271   GA-UUUGAACUUGAGAUUUGGU   1291 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA119P11, full insert sequence	NA	coding protein	psRNATarget
AK066543.1	ncRNA:22   CUCAAACUUGAACUUUAAACCA   1   ****|||||=|||||||||||| targets:2012   UUCCUUGAAUUUGAAAUUUGGU   2033 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013069G15, full insert sequence	NA	coding protein	psRNATarget
AK066892.1	ncRNA:22   CUCAAACUUGAACUUUAAACCA   1   |||*|**||||||||||||||| targets:840   GAGCUGUAACUUGAAAUUUGGU   861 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013088A19, full insert sequence	NA	coding protein	psRNATarget