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BaseInfo

ncRNA ID	novel_osa_miR3285
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:8713575-8713635 [+]
Reference genome	IRGSP-1.0
Source	SRR2040387;SRR2040393;SRR2040398;SRR2857730
Length	24
Mature sequence(if miRNA)	1 - ACCGGGACUAAAGAUAUCUUUACU - 24
Stem-loop(if miRNA)	--                         AAC   ACCGGGACUAAAGAUAUCUUUACUC   A   |||||||||||||||||||||||||   A   UGGCCUUGAUUUCUAUAGAAAUGAG   C GU                         GGC
Stem-loop sequence	ACCGGGACUAAAGAUAUCUUUACUCAACAACCGGGAGUAAAGAUAUCUUUAGUUCCGGUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288859.1	ncRNA:24   UCAUUUCUAUAGAAAUCAGGGCCA   1   |||||||||||||||||||||||| targets:2230   AGUAAAGAUAUCUUUAGUCCCGGU   2253 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090076J15, full insert sequence	NA	coding protein	psRNATarget
AK288859.1	ncRNA:24   UCAUUUCUAUAGAAAUCAGGGCCA   1   ||||||||||||||||*||||||| targets:2300   AGUAAAGAUAUCUUUACUCCCGGU   2323 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090076J15, full insert sequence	NA	coding protein	psRNATarget
AK121178.1	ncRNA:24   UCAUUUCUAUAGAAAUCAGGGCCA   1   |*|||||||||=|||||||||||| targets:1968   ACUAAAGAUAUUUUUAGUCCCGGU   1991 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023083G22, full insert sequence	NA	coding protein	psRNATarget
AK289098.1	ncRNA:24   UCAUUUCUAUAGAAAUCAGGGCCA   1   **||||*|*||||||||||||||| targets:139   UAUAAAUAGAUCUUUAGUCCCGGU   162 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK289098.1	ncRNA:24   UCAUUUCUAUAGAAAUCAGGGCCA   1   ***|||*|*||||||||||||||| targets:230   UACAAAUAGAUCUUUAGUCCCGGU   253 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK288624.1	ncRNA:24   UCAUUUCUAUA-GAAAUCAGGGCCA   1   |*|||||||||-||||||||||||| targets:4829   ACUAAAGAUAUUCUUUAGUCCCGGU   4853 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090054H14, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:24   UCAUUUCUA--UAGAAAUCAGGGCCA   1   |*|||||||--||||||||||||||| targets:633   ACUAAAGAUGGAUCUUUAGUCCCGGU   658 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:24   UCAUUUCUA-UAGAAAUCAGGGCCA   1   |*||*|*||-||||||||||||||| targets:416   ACUACAAAUGAUCUUUAGUCCCGGU   440 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
AK288796.1	ncRNA:24   UCAUUUCUA--UAGAAAUCAGGGCCA   1   |*|||||||--||||||||||||||| targets:1820   ACUAAAGAUCGAUCUUUAGUCCCGGU   1845 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
AK288544.1	ncRNA:24   UCAUUUCUAUAGAAAUCAGGGCCA   1   ||||||||*|||||||*||||||| targets:1849   AGUAAAGAAAUCUUUACUCCCGGU   1872 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090046G24, full insert sequence	NA	coding protein	psRNATarget
XM_015779829.1	ncRNA:24   UCAUUUCUA-UAGAAAUCAGGGCCA   1   |*||||*||-||||||||||||||| targets:1640   ACUAAAAAUCAUCUUUAGUCCCGGU   1664 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
AK288438.1	ncRNA:24   UCAUUUCUAUAGAAAUCAGGGCCA   1   ***=**|=|||||||||||||||| targets:1414   CCGGUUGGUAUCUUUAGUCCCGGU   1437 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK288424.1	ncRNA:24   UCAUUUCUA-UAGAAAUCAGGGCCA   1   |*||||*||-||||||||||||||| targets:2372   ACUAAAAAUGAUCUUUAGUCCCGGU   2396 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK288153.1	ncRNA:24   UCAUUUCUA-UAGAAAUCAGGGCCA   1   |*||*||||-||||||||||||||| targets:31   ACUAUAGAUCAUCUUUAGUCCCGGU   55 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J080319C04, full insert sequence	NA	coding protein	psRNATarget
AK061057.1	ncRNA:24   UCAUUUCUA-UAGAAAUCAGGGCCA   1   |*||||*||-||||||||||||||| targets:239   AUUAAAAAUGAUCUUUAGUCCCGGU   263 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:006-205-H07, full insert sequence	NA	coding protein	psRNATarget
XM_015774888.1	ncRNA:24   UCAUUUCUA-UAGAAAUCAGGGCCA   1   |*||*||||-||||||||||||||| targets:1432   ACUAUAGAUCAUCUUUAGUCCCGGU   1456 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X3, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
XM_015774887.1	ncRNA:24   UCAUUUCUA-UAGAAAUCAGGGCCA   1   |*||*||||-||||||||||||||| targets:1438   ACUAUAGAUCAUCUUUAGUCCCGGU   1462 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X2, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
AK099726.1	ncRNA:24   UCAUUUCUAUAGAAAUCAGGGCCA   1   |**|||*|||||||||||*||||| targets:1084   AAAAAAUAUAUCUUUAGUACCGGU   1107 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013089E05, full insert sequence	NA	coding protein	psRNATarget