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BaseInfo

ncRNA ID	novel_osa_miR3283
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:5678771-5678883 [+]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1556020
Length	24
Mature sequence(if miRNA)	90 - UAGGUAAUGCUAGAAAGUCUUACA - 113
Stem-loop(if miRNA)	--             AC      ----------      ---AUCCG   AU   -      U   UAAGACUUUUUGG  UUAUCU          AGAUGU        UUG  CAC UAUAUA G   |||||||||||||  ||||||          ||||||        |||  ||| |||||| U   AUUCUGAAAGAUC  AAUGGA          UCUACG        GAC  GUG AUAUGU U AC             GU      UUUAAGUAUA      AUUAUUUA   CU   U      U
Stem-loop sequence	UAAGACUUUUUGGACUUAUCUAGAUGUAUCCGUUGAUCACUAUAUAUGUUUUGUAUAUGUGUCCAGAUUUAUUAGCAUCUAUAUGAAUUUAGGUAAUGCUAGAAAGUCUUACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT836048.1	ncRNA:24   ACAUUCUGAAAGAUCGUAAUGGAU   1   |||||||||||||||||||=|||| targets:442   UGUAAGACUUUCUAGCAUUGCCUA   465 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA023O09, full insert sequence	NA	coding protein	psRNATarget
XM_015778732.1	ncRNA:24   ACAUUCUGAAAGAUCGUAAUGG-AU   1   *|||||||||||||||||||||-|| targets:307   GGUAAGACUUUCUAGCAUUACCAUA   331 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group hyoscyamine 6-dioxygenase (LOC4337327), mRNA	hyoscyamine 6-dioxygenase(LOC4337327)	coding protein	psRNATarget
XM_015758512.1	ncRNA:24   ACAUUCUGAAAGAUCGUAAUGGAU   1   |*|||||||||||||||||=|||| targets:1437   UAUAAGACUUUCUAGCAUUGCCUA   1460 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group BTB/POZ and MATH domain-containing protein 1-like (LOC107279175), mRNA	BTB/POZ and MATH domain-containing protein 1-like(LOC107279175)	coding protein	psRNATarget
XM_015792379.1	ncRNA:24   ACAUUCUGAAAGAUCGUAAUGGAU   1   |*||||||||||||||||||=||| targets:818   UAUAAGACUUUCUAGCAUUAUCUA   841 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g14100 (LOC4342613), mRNA	uncharacterized protein At4g14100(LOC4342613)	coding protein	psRNATarget
AK071758.1	ncRNA:24   ACAUUCUGAAAGAUCGUAAUGGAU   1   |*||||||||||||||||||=||| targets:806   UAUAAGACUUUCUAGCAUUAUCUA   829 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023112J01, full insert sequence	NA	coding protein	psRNATarget
AK288429.1	ncRNA:24   ACAUUCUGAAAGAUCGUAA-UGGAU   1   |*|||||||||||||||||-||||| targets:2510   UAUAAGACUUUCUAGCAUUUACCUA   2534 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090033C09, full insert sequence	NA	coding protein	psRNATarget
AK068435.1	ncRNA:24   ACAUUCUGAAAGAUCGUAAUGGAU   1   |*||||||||||||||||||||*| targets:1573   UAUAAGACUUUCUAGCAUUACCCA   1596 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013155N15, full insert sequence	NA	coding protein	psRNATarget
AK073998.1	ncRNA:24   ACAUUCUGAAAGAUCGUAAUGGAU   1   |*||||||||||||||||||||*| targets:1507   UAUAAGACUUUCUAGCAUUACCCA   1530 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033071H21, full insert sequence	NA	coding protein	psRNATarget
AK071625.1	ncRNA:24   ACAUUCUGAAAGAUCGUAAUGGAU   1   |*||||||||||||||||||||*| targets:1301   UAUAAGACUUUCUAGCAUUACCCA   1324 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023106F16, full insert sequence	NA	coding protein	psRNATarget
XM_015786027.1	ncRNA:24   ACAUUCUGAAAGAUCGUAAUGGAU   1   |*||||||*||||||||||=|||| targets:4274   UAUAAGACCUUCUAGCAUUGCCUA   4297 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ABC transporter C family member 8 (LOC9267441), mRNA	ABC transporter C family member 8(LOC9267441)	coding protein	psRNATarget