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BaseInfo

ncRNA ID	novel_osa_miR3281
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:18048964-18049020 [+]
Reference genome	IRGSP-1.0
Source	SRR2040387;SRR2040395
Length	24
Mature sequence(if miRNA)	1 - AUCCUAGUACAAUGAAUUUGGACA - 24
Stem-loop(if miRNA)	--         CA             GG   AUCCUAGUA  AUGAAUUUGGACA  C   |||||||||  |||||||||||||  U   UAGGAUCAU  UACUUAGACCUGU  U UG         AC             AU
Stem-loop sequence	AUCCUAGUACAAUGAAUUUGGACAGGCUUUAUGUCCAGAUUCAUCAUACUAGGAUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ236287.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   ||||||=||||||||||||||||| targets:52   UGUCCAGAUUCAUUGUACUAGGAU   75 Target Full Sequence	1.0	Sequence 2282 from Patent EP2985353	NA	coding protein	psRNATarget
JB164618.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   ||||||=||||||||||||||||| targets:52   UGUCCAGAUUCAUUGUACUAGGAU   75 Target Full Sequence	1.0	Sequence 2282 from Patent EP2559767	NA	coding protein	psRNATarget
HI404157.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   ||||||=||||||||||||||||| targets:52   UGUCCAGAUUCAUUGUACUAGGAU   75 Target Full Sequence	1.0	Sequence 2282 from Patent EP2074227	NA	coding protein	psRNATarget
HI404290.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   ||||||=||||||||||||||||| targets:54   UGUCCAGAUUCAUUGUACUAGGAU   77 Target Full Sequence	1.0	Sequence 2415 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236420.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   ||||||=||||||||||||||||| targets:54   UGUCCAGAUUCAUUGUACUAGGAU   77 Target Full Sequence	1.0	Sequence 2415 from Patent EP2985353	NA	coding protein	psRNATarget
JB164751.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   ||||||=||||||||||||||||| targets:54   UGUCCAGAUUCAUUGUACUAGGAU   77 Target Full Sequence	1.0	Sequence 2415 from Patent EP2559767	NA	coding protein	psRNATarget
AK101131.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   ||||||=||||=|||||||||||| targets:87   UGUCCAGAUUCGUUGUACUAGGAU   110 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033026D12, full insert sequence	NA	coding protein	psRNATarget
AK289139.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   ||||=||||||=|||||||||||| targets:1353   UGUCUAAAUUCGUUGUACUAGGAU   1376 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090099E06, full insert sequence	NA	coding protein	psRNATarget
JB164426.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   |||||||||||||*|||||||||| targets:32   UGUCCAAAUUCAUAGUACUAGGAU   55 Target Full Sequence	1.5	Sequence 2090 from Patent EP2559767	NA	coding protein	psRNATarget
HI403965.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   |||||||||||||*|||||||||| targets:32   UGUCCAAAUUCAUAGUACUAGGAU   55 Target Full Sequence	1.5	Sequence 2090 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236095.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   |||||||||||||*|||||||||| targets:32   UGUCCAAAUUCAUAGUACUAGGAU   55 Target Full Sequence	1.5	Sequence 2090 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015776920.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   |||=||=|||=||||||||||||| targets:1   UGUUCAGAUUUAUUGUACUAGGAU   24 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group fasciclin-like arabinogalactan protein 16 (LOC4334368), mRNA	fasciclin-like arabinogalactan protein 16(LOC4334368)	coding protein	psRNATarget
AK241705.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   |||=||=||||=|||||||||||| targets:3376   UGUUCAGAUUCGUUGUACUAGGAU   3399 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065196L09, full insert sequence	NA	coding protein	psRNATarget
AK288631.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   ||||=|=||||=|||||||||||| targets:1316   UGUCUAGAUUCGUUGUACUAGGAU   1339 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090055C12, full insert sequence	NA	coding protein	psRNATarget
XM_015776443.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   ||||||=|||=||||||||||||* targets:1382   UGUCCAGAUUUAUUGUACUAGGAG   1405 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327623 (LOC4327623), mRNA	uncharacterized LOC4327623(LOC4327623)	coding protein	psRNATarget
AK063200.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   ||||||=|||||||||||||||*| targets:521   UGUCCAGAUUCAUUGUACUAGGUU   544 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-112-C07, full insert sequence	NA	coding protein	psRNATarget
XM_015758930.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   ||||||=|||||||*||||||||| targets:1143   UGUCCAGAUUCAUUAUACUAGGAU   1166 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4348034 (LOC4348034), transcript variant X4, mRNA	uncharacterized LOC4348034(Os10g0130500)	coding protein	psRNATarget
XM_015758929.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   ||||||=|||||||*||||||||| targets:1692   UGUCCAGAUUCAUUAUACUAGGAU   1715 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4348034 (LOC4348034), transcript variant X3, mRNA	uncharacterized LOC4348034(Os10g0130500)	coding protein	psRNATarget
XM_015759388.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   ||||||=||||||||||||||*|| targets:448   UGUCCAGAUUCAUUGUACUAGAAU   471 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ent-cassadiene C2-hydroxylase-like (LOC4348721), transcript variant X2, mRNA	ent-cassadiene C2-hydroxylase-like(LOC4348721)	coding protein	psRNATarget
AK063452.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   ||||||=||||||||||||||*|| targets:150   UGUCCAGAUUCAUUGUACUAGAAU   173 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-115-G03, full insert sequence	NA	coding protein	psRNATarget
AK288793.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   ||||||=||||||*|||||||||| targets:859   UGUCCAGAUUCAUAGUACUAGGAU   882 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090070C08, full insert sequence	NA	coding protein	psRNATarget
AK120243.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   ||||||=|||||||*||||||||| targets:6313   UGUCCAGAUUCAUUAUACUAGGAU   6336 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013044H03, full insert sequence	NA	coding protein	psRNATarget
AK111410.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   ||||=|=||||||||*|||||||| targets:49   UGUCUAGAUUCAUUGGACUAGGAU   72 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-182-F03, full insert sequence	NA	coding protein	psRNATarget
AK288762.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   |*||||=||||=|||||||||||| targets:763   UAUCCAGAUUCGUUGUACUAGGAU   786 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090067F13, full insert sequence	NA	coding protein	psRNATarget
AK119339.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   ||||=|=||||||*|||||||||| targets:338   UGUCUAGAUUCAUAGUACUAGGAU   361 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-131-D05, full insert sequence	NA	coding protein	psRNATarget
HI403709.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   |||||||||*||||||||||*||| targets:47   UGUCCAAAUACAUUGUACUAAGAU   70 Target Full Sequence	2.5	Sequence 1834 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235839.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   |||||||||*||||||||||*||| targets:47   UGUCCAAAUACAUUGUACUAAGAU   70 Target Full Sequence	2.5	Sequence 1834 from Patent EP2985353	NA	coding protein	psRNATarget
JB164170.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   |||||||||*||||||||||*||| targets:47   UGUCCAAAUACAUUGUACUAAGAU   70 Target Full Sequence	2.5	Sequence 1834 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015766595.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   |||*||==|||||||||||||||* targets:2006   UGUACAGGUUCAUUGUACUAGGAG   2029 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group glutathione S-transferase T3 (LOC4324954), transcript variant X4, mRNA	glutathione S-transferase T3(LOC4324954)	coding protein	psRNATarget
XM_015766594.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   |||*||==|||||||||||||||* targets:2006   UGUACAGGUUCAUUGUACUAGGAG   2029 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group glutathione S-transferase T3 (LOC4324954), transcript variant X3, mRNA	glutathione S-transferase T3(LOC4324954)	coding protein	psRNATarget
XM_015766593.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   |||*||==|||||||||||||||* targets:2006   UGUACAGGUUCAUUGUACUAGGAG   2029 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group glutathione S-transferase T3 (LOC4324954), transcript variant X2, mRNA	glutathione S-transferase T3(LOC4324954)	coding protein	psRNATarget
LQ236602.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   |*||=|=||||||||*|||||||| targets:34   UAUCUAGAUUCAUUGGACUAGGAU   57 Target Full Sequence	2.5	Sequence 2597 from Patent EP2985353	NA	coding protein	psRNATarget
HI404472.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   |*||=|=||||||||*|||||||| targets:34   UAUCUAGAUUCAUUGGACUAGGAU   57 Target Full Sequence	2.5	Sequence 2597 from Patent EP2074227	NA	coding protein	psRNATarget
JB164933.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   |*||=|=||||||||*|||||||| targets:34   UAUCUAGAUUCAUUGGACUAGGAU   57 Target Full Sequence	2.5	Sequence 2597 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015792994.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   |*||=|=||||||||||||||*|| targets:1660   UAUCUAGAUUCAUUGUACUAGAAU   1683 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative serine/threonine-protein kinase-like protein CCR3 (LOC4345414), mRNA	putative serine/threonine-protein kinase-like protein CCR3(LOC4345414)	coding protein	psRNATarget
AK243017.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   |*||=||||||||||||||||*|* targets:1206   UAUCUAAAUUCAUUGUACUAGAAA   1229 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090098N17, full insert sequence	NA	coding protein	psRNATarget
HI404508.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   |*|==||||*|||||||||=|||| targets:40   UAUUUAAAUACAUUGUACUGGGAU   63 Target Full Sequence	2.5	Sequence 2633 from Patent EP2074227	NA	coding protein	psRNATarget
JB164969.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   |*|==||||*|||||||||=|||| targets:40   UAUUUAAAUACAUUGUACUGGGAU   63 Target Full Sequence	2.5	Sequence 2633 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236638.1	ncRNA:24   ACAGGUUUAAGUAACAUGAUCCUA   1   |*|==||||*|||||||||=|||| targets:40   UAUUUAAAUACAUUGUACUGGGAU   63 Target Full Sequence	2.5	Sequence 2633 from Patent EP2985353	NA	coding protein	psRNATarget