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BaseInfo

ncRNA ID	novel_osa_miR3278
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:10921074-10921181 [+]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1556020
Length	24
Mature sequence(if miRNA)	85 - AUAUGGACAAUACUAGAAAGACUU - 108
Stem-loop(if miRNA)	--GA        C   AC                             G   CAC     CUUUCUAG AUU  UCAUAUUUAUAUAGAUGUUAAUGAAUCUA ACA   A     |||||||| |||  ||||||||||||||||||||||||||||| |||     GAAAGAUC UAA  GGUAUAAGUAUAUCUACAAUUAUUUAGAU UGU   U UUCA        A   CA                             A   AUA
Stem-loop sequence	GACUUUCUAGCAUUACUCAUAUUUAUAUAGAUGUUAAUGAAUCUAGACACACAUAUAUGUAUAGAUUUAUUAACAUCUAUAUGAAUAUGGACAAUACUAGAAAGACUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015772638.1	ncRNA:24   UUCAGAAAGAUCAUAACAGGUAUA   1   |||*||||=||||||||||||||| targets:1232   AAGACUUUUUAGUAUUGUCCAUAU   1255 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group probable carboxylesterase 8 (LOC4332273), mRNA	probable carboxylesterase 8(LOC4332273)	coding protein	psRNATarget
AK241082.1	ncRNA:24   UUCAGAAAGAUCAUAACAGGUAUA   1   |||*||||=||||||||||||||| targets:1215   AAGACUUUUUAGUAUUGUCCAUAU   1238 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J065073H04, full insert sequence	NA	coding protein	psRNATarget
XM_015781389.1	ncRNA:24   UUCAGAAAGAUCAUAACAGGUAUA   1   |||*|||||||||||||||||*|| targets:744   AAGACUUUCUAGUAUUGUCCACAU   767 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X1, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
XM_015781390.1	ncRNA:24   UUCAGAAAGAUCAUAACAGGUAUA   1   |||*|||||||||||||||||*|| targets:744   AAGACUUUCUAGUAUUGUCCACAU   767 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X2, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
AK068294.1	ncRNA:24   UUCAGAAAGAUCAUAACAGGUAUA   1   |||*||||||||*||||||||||| targets:1817   AAGACUUUCUAGCAUUGUCCAUAU   1840 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013148J04, full insert sequence	NA	coding protein	psRNATarget
CT833624.1	ncRNA:24   UUCAGAAAGAUCAUAACAGGUAUA   1   |||*||||||||*||||||||||| targets:1039   AAGACUUUCUAGCAUUGUCCAUAU   1062 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN046D04, full insert sequence	NA	coding protein	psRNATarget
XM_015755249.1	ncRNA:24   UUCAGAAAGAUCAUAACAGGUAUA   1   |||*||||||||*||||||||||| targets:763   AAGACUUUCUAGCAUUGUCCAUAU   786 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4347372 (LOC4347372), mRNA	uncharacterized LOC4347372(LOC4347372)	coding protein	psRNATarget
AK289029.1	ncRNA:24   UUCAGAAAGAUCAUAACAGGUAUA   1   |||*=|||=||||||||||||*|| targets:1513   AAGAUUUUUUAGUAUUGUCCACAU   1536 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090090O22, full insert sequence	NA	coding protein	psRNATarget
XM_015791317.1	ncRNA:24   UUCAGAAAGAUCAUAACAGGUAUA   1   |||*|||*||||*||||||||||| targets:4437   AAGACUUCCUAGCAUUGUCCAUAU   4460 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342778 (LOC4342778), transcript variant X1, mRNA	uncharacterized LOC4342778(Os07g0231700)	coding protein	psRNATarget