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BaseInfo

ncRNA ID	novel_osa_miR3277
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:29565310-29565491 [-]
Reference genome	IRGSP-1.0
Source	SRR2040387
Length	24
Mature sequence(if miRNA)	1 - AAACGUUACAAGAAAAACUCAAAA - 24
Stem-loop(if miRNA)	--    A     A    C        GC                UUUUUUU   C    AUAAAAAAUGAAAAG     -    AAG  C  U   UUGA UUUUU UUUG AACGUUUG  CGUUCGUCUUAUUCAA       UUG AAAU               UUGUG CUUA   UA UG G   |||| ||||| |||| ||||||||  ||||||||||||||||       ||| ||||               ||||| ||||   || ||   AACU AAAAA GAAC UUGCAAAU  GUGAGCAGAAUAAGUU       AAC UUUA               AACAC GAAU   AU AU G AA    C     -    A        UA                -UUUUUU   -    AUAAUAAAUAAAAUA     U    GAA  A  A
Stem-loop sequence	UUGAAUUUUUAUUUGCAACGUUUGGCCGUUCGUCUUAUUCAAUUUUUUUUUGCAAAUAUAAAAAAUGAAAAGUUGUGCUUAAAGUACUGUGGAUAAUAAAGUAAGUCACAAAUAAAAUAAAUAAUAAUUUCAAUUUUUUUUGAAUAAGACGAGUGAUUAAACGUUACAAGAAAAACUCAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK064773.1	ncRNA:24   AAAACUCAAAAA-GAACAUUGCAAA   1   ||||||||||||-|||||||||||| targets:2904   UUUUGAGUUUUUGCUUGUAACGUUU   2928 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013000A22, full insert sequence	NA	coding protein	psRNATarget
AK068176.1	ncRNA:24   AAAACUCAAAAA-GAACAUUGCAAA   1   ||||||||||||-|||||||||||| targets:1687   UUUUGAGUUUUUGCUUGUAACGUUU   1711 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013132G13, full insert sequence	NA	coding protein	psRNATarget
AK100009.1	ncRNA:24   AAAACUCAAAAA-GAACAUUGCAAA   1   ||||||||||||-|||||||||||| targets:884   UUUUGAGUUUUUGCUUGUAACGUUU   908 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013138B09, full insert sequence	NA	coding protein	psRNATarget
XM_015780390.1	ncRNA:24   AAAACUCAAAAA-GAACAUUGCAAA   1   ||||||||||||-|||||||||||| targets:1642   UUUUGAGUUUUUGCUUGUAACGUUU   1666 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group 7-deoxyloganetin glucosyltransferase (LOC4336004), mRNA	7-deoxyloganetin glucosyltransferase(LOC4336004)	coding protein	psRNATarget
AK061024.1	ncRNA:24   AAAACUCAAAAA-GAACAUUGCAAA   1   ||||||||||||-|||||||||||| targets:1622   UUUUGAGUUUUUGCUUGUAACGUUU   1646 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:006-204-F02, full insert sequence	NA	coding protein	psRNATarget
XM_015761216.1	ncRNA:24   AAAACUCAAAAA-GAACAUUGCAAA   1   ||||*|||||||-|||||||||||| targets:1286   UUUUAAGUUUUUGCUUGUAACGUUU   1310 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327188 (LOC4327188), transcript variant X3, mRNA	uncharacterized LOC4327188(LOC4327188)	coding protein	psRNATarget
XM_015761224.1	ncRNA:24   AAAACUCAAAAA-GAACAUUGCAAA   1   ||||*|||||||-|||||||||||| targets:1260   UUUUAAGUUUUUGCUUGUAACGUUU   1284 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327188 (LOC4327188), transcript variant X4, mRNA	uncharacterized LOC4327188(LOC4327188)	coding protein	psRNATarget
XM_015761204.1	ncRNA:24   AAAACUCAAAAA-GAACAUUGCAAA   1   ||||*|||||||-|||||||||||| targets:1215   UUUUAAGUUUUUGCUUGUAACGUUU   1239 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327188 (LOC4327188), transcript variant X1, mRNA	uncharacterized LOC4327188(LOC4327188)	coding protein	psRNATarget
XM_015761210.1	ncRNA:24   AAAACUCAAAAA-GAACAUUGCAAA   1   ||||*|||||||-|||||||||||| targets:1182   UUUUAAGUUUUUGCUUGUAACGUUU   1206 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327188 (LOC4327188), transcript variant X2, mRNA	uncharacterized LOC4327188(LOC4327188)	coding protein	psRNATarget
XM_015766724.1	ncRNA:24   AAAACUC-AAAAAGAACAUUGCAAA   1   *|||*|*-||||||||||||||||| targets:2902   AUUUCACAUUUUUCUUGUAACGUUU   2926 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group serine/threonine-protein kinase HT1 (LOC4325541), mRNA	serine/threonine-protein kinase HT1(LOC4325541)	coding protein	psRNATarget
CT835964.1	ncRNA:24   AAAACUCAAAAAGAACAUUGCAAA   1   ***||*|||||||*|||||||||| targets:1826   CCAUGCGUUUUUCAUGUAACGUUU   1849 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA114I05, full insert sequence	NA	coding protein	psRNATarget
AK240812.1	ncRNA:24   AAAACUCAAAAAGAACAUUGCAAA   1   ***||*|||||||*|||||||||| targets:1799   CCAUGCGUUUUUCAUGUAACGUUU   1822 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065007C20, full insert sequence	NA	coding protein	psRNATarget
AK066510.1	ncRNA:24   AAAACUCA-AAAAGAACAUUGCAAA   1   |*||*|*|-|||||||||||||||| targets:1274   UAUUCACUAUUUUCUUGUAACGUUU   1298 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013068L16, full insert sequence	NA	coding protein	psRNATarget