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BaseInfo

ncRNA ID	novel_osa_miR3276
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:13219080-13219148 [+]
Reference genome	IRGSP-1.0
Source	SRR2040387;SRR2040388;SRR2040405
Length	24
Mature sequence(if miRNA)	46 - AUUUUUACUCGUGAUGACAUGGAC - 69
Stem-loop(if miRNA)	--                          --A       CCAUGUCAUCACGAGUAAAAAUUUUA   UCACG   ||||||||||||||||||||||||||   ||||A   GGUACAGUAGUGCUCAUUUUUAAAAU   GGUGU CA                          GAG
Stem-loop sequence	CCAUGUCAUCACGAGUAAAAAUUUUAAUCACGAUGUGGGAGUAAAAUUUUUACUCGUGAUGACAUGGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015790977.1	ncRNA:24   CAGGUACAGUAGUGCUCAUUUUUA   1   ||||||||||||||||||||||=| targets:3283   GUCCAUGUCAUCACGAGUAAAAGU   3306 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4344388 (LOC4344388), transcript variant X3, mRNA	uncharacterized LOC4344388(LOC4344388)	coding protein	psRNATarget
XM_015790976.1	ncRNA:24   CAGGUACAGUAGUGCUCAUUUUUA   1   ||||||||||||||||||||||=| targets:3630   GUCCAUGUCAUCACGAGUAAAAGU   3653 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4344388 (LOC4344388), transcript variant X2, mRNA	uncharacterized LOC4344388(LOC4344388)	coding protein	psRNATarget
JB164606.1	ncRNA:24   CAGGUACAGUAGUGCUCAUUUUUA   1   ||||||||||||||||||*||||| targets:4   GUCCAUGUCAUCACGAGUUAAAAU   27 Target Full Sequence	1.5	Sequence 2270 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236275.1	ncRNA:24   CAGGUACAGUAGUGCUCAUUUUUA   1   ||||||||||||||||||*||||| targets:4   GUCCAUGUCAUCACGAGUUAAAAU   27 Target Full Sequence	1.5	Sequence 2270 from Patent EP2985353	NA	coding protein	psRNATarget
HI404145.1	ncRNA:24   CAGGUACAGUAGUGCUCAUUUUUA   1   ||||||||||||||||||*||||| targets:4   GUCCAUGUCAUCACGAGUUAAAAU   27 Target Full Sequence	1.5	Sequence 2270 from Patent EP2074227	NA	coding protein	psRNATarget
AK288868.1	ncRNA:24   CAGGUACAGUAGUGCUCAUUUUUA   1   *|=||||||||||||||||||||| targets:5437   AUUCAUGUCAUCACGAGUAAAAAU   5460 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090078E01, full insert sequence	NA	coding protein	psRNATarget
CT835866.1	ncRNA:24   CAGGUACAGUAGUGCUCAUUUUUA   1   ||=||*|||||||||||||||||| targets:203   GUUCACGUCAUCACGAGUAAAAAU   226 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI027A04, full insert sequence	NA	coding protein	psRNATarget
AK243022.1	ncRNA:24   CAGGUACAGUAGUGCUCAUUUUUA   1   ||=||*|||||||||||||||||| targets:1334   GUUCACGUCAUCACGAGUAAAAAU   1357 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J100001E20, full insert sequence	NA	coding protein	psRNATarget
XM_015755327.1	ncRNA:24   CAGGUACAGUAGUGCUCAUUUUUA   1   ||=||*|||||||||||||||||| targets:1498   GUUCACGUCAUCACGAGUAAAAAU   1521 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group probable cinnamyl alcohol dehydrogenase 8D (LOC4346993), mRNA	probable cinnamyl alcohol dehydrogenase 8D(LOC4346993)	coding protein	psRNATarget
HI404187.1	ncRNA:24   CAGGUACAGUAGUGCUCAUUUUUA   1   |||||*||||||||||||*||||| targets:4   GUCCACGUCAUCACGAGUUAAAAU   27 Target Full Sequence	2.5	Sequence 2312 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236317.1	ncRNA:24   CAGGUACAGUAGUGCUCAUUUUUA   1   |||||*||||||||||||*||||| targets:4   GUCCACGUCAUCACGAGUUAAAAU   27 Target Full Sequence	2.5	Sequence 2312 from Patent EP2985353	NA	coding protein	psRNATarget
JB164648.1	ncRNA:24   CAGGUACAGUAGUGCUCAUUUUUA   1   |||||*||||||||||||*||||| targets:4   GUCCACGUCAUCACGAGUUAAAAU   27 Target Full Sequence	2.5	Sequence 2312 from Patent EP2559767	NA	coding protein	psRNATarget
JB164993.1	ncRNA:24   CAGGUACAGUAGUGCUCAUUUUUA   1   |||||*||||||||||||*||||| targets:4   GUCCACGUCAUCACGAGUUAAAAU   27 Target Full Sequence	2.5	Sequence 2657 from Patent EP2559767	NA	coding protein	psRNATarget
HI404532.1	ncRNA:24   CAGGUACAGUAGUGCUCAUUUUUA   1   |||||*||||||||||||*||||| targets:4   GUCCACGUCAUCACGAGUUAAAAU   27 Target Full Sequence	2.5	Sequence 2657 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236662.1	ncRNA:24   CAGGUACAGUAGUGCUCAUUUUUA   1   |||||*||||||||||||*||||| targets:4   GUCCACGUCAUCACGAGUUAAAAU   27 Target Full Sequence	2.5	Sequence 2657 from Patent EP2985353	NA	coding protein	psRNATarget
JB164719.1	ncRNA:24   CAGGUACAGUAGUGCUCAUUUUUA   1   ||=||*||||||||||||*||||| targets:4   GUUCACGUCAUCACGAGUUAAAAU   27 Target Full Sequence	2.5	Sequence 2383 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236388.1	ncRNA:24   CAGGUACAGUAGUGCUCAUUUUUA   1   ||=||*||||||||||||*||||| targets:4   GUUCACGUCAUCACGAGUUAAAAU   27 Target Full Sequence	2.5	Sequence 2383 from Patent EP2985353	NA	coding protein	psRNATarget
HI404258.1	ncRNA:24   CAGGUACAGUAGUGCUCAUUUUUA   1   ||=||*||||||||||||*||||| targets:4   GUUCACGUCAUCACGAGUUAAAAU   27 Target Full Sequence	2.5	Sequence 2383 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236387.1	ncRNA:24   CAGGUACAGUAGUGCUCAUUUUUA   1   ||=||*||||||||||||*||||| targets:70   GUUCACGUCAUCACGAGUUAAAAU   93 Target Full Sequence	2.5	Sequence 2382 from Patent EP2985353	NA	coding protein	psRNATarget
JB164718.1	ncRNA:24   CAGGUACAGUAGUGCUCAUUUUUA   1   ||=||*||||||||||||*||||| targets:70   GUUCACGUCAUCACGAGUUAAAAU   93 Target Full Sequence	2.5	Sequence 2382 from Patent EP2559767	NA	coding protein	psRNATarget
HI404257.1	ncRNA:24   CAGGUACAGUAGUGCUCAUUUUUA   1   ||=||*||||||||||||*||||| targets:70   GUUCACGUCAUCACGAGUUAAAAU   93 Target Full Sequence	2.5	Sequence 2382 from Patent EP2074227	NA	coding protein	psRNATarget
AK288313.1	ncRNA:24   CAGGUACAGUAGUGCUCAUUUUUA   1   *||||*||||||||*||||||||| targets:3576   AUCCACGUCAUCACAAGUAAAAAU   3599 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090021D10, full insert sequence	NA	coding protein	psRNATarget