Search result

BaseInfo

ncRNA ID novel_osa_miR3272
Species Oryza sativa
Class miRNA
Genome position Chr3:5164954-5165095 [+]
Reference genome IRGSP-1.0
Source SRR2040387;SRR2040400;SRR2040408;SRR2040410;SRR3123651;SRR1738240
Length 21
Mature sequence(if miRNA) 1 - UCUGUUUCAUAAUGUAAGACU - 21
Stem-loop(if miRNA) --                                              C  UUU              CAC
  UCUGUUUCAUAAUGUAAGACUUUCUAGCAUUGCCUACAUUCAUAUA AU   AAUGAAUCUAGACA   A
  |||||||||||||||||||||||||||||||||||||||||||||| ||   ||||||||||||||
  AGGCAAAGUAUUACAUUCUGAAAGAUCGUAGCGGGUGUAAGUAUAU UA   UUACUUAGAUUUGU   C
GG                                              C  UAU              AUA
Stem-loop sequence UCUGUUUCAUAAUGUAAGACUUUCUAGCAUUGCCUACAUUCAUAUACAUUUUAAUGAAUCUAGACACACACAUAUGUUUAGAUUCAUUUAUAUCUAUAUGAAUGUGGGCGAUGCUAGAAAGUCUUACAUUAUGAAACGGAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
CT836330.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  |||||||||||=|||||||||
targets:924   AGUCUUACAUUGUGAAACAGA   944

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN072K19, full insert sequence NA coding protein psRNATarget
AK241537.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  |||||||||||=|||||||||
targets:926   AGUCUUACAUUGUGAAACAGA   946

1.5 Oryza sativa Japonica Group cDNA, clone: J065173J04, full insert sequence NA coding protein psRNATarget
AK066283.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  ||||||||||||||||||=||
targets:1049   AGUCUUACAUUAUGAAACGGA   1069

1.5 Oryza sativa Japonica Group cDNA clone:J013063D15, full insert sequence NA coding protein psRNATarget
XM_015761840.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  ||||||||||||||||||=||
targets:2075   AGUCUUACAUUAUGAAACGGA   2095

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350579 (LOC4350579), mRNA uncharacterized LOC4350579(LOC4350579) coding protein psRNATarget
AK101666.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  |||||||||||=|||||||||
targets:1702   AGUCUUACAUUGUGAAACAGA   1722

1.5 Oryza sativa Japonica Group cDNA clone:J033057N11, full insert sequence NA coding protein psRNATarget
AK110958.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  |||||||=||||||||||=||
targets:586   AGUCUUAUAUUAUGAAACGGA   606

2.5 Oryza sativa Japonica Group cDNA clone:002-174-A09, full insert sequence NA coding protein psRNATarget
XM_015755199.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  |||||||=||||||||||=||
targets:1178   AGUCUUAUAUUAUGAAACGGA   1198

2.5 PREDICTED: Oryza sativa Japonica Group cinnamoyl-CoA reductase 1 (LOC9270429), transcript variant X1, mRNA cinnamoyl-CoA reductase 1(LOC9270429) coding protein psRNATarget
XM_015755201.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  |||||||=||||||||||=||
targets:1181   AGUCUUAUAUUAUGAAACGGA   1201

2.5 PREDICTED: Oryza sativa Japonica Group cinnamoyl-CoA reductase 1 (LOC9270429), transcript variant X2, mRNA cinnamoyl-CoA reductase 1(LOC9270429) coding protein psRNATarget
AK106777.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  |||||||=||||||||||=||
targets:1392   AGUCUUAUAUUAUGAAACGGA   1412

2.5 Oryza sativa Japonica Group cDNA clone:002-115-G12, full insert sequence NA coding protein psRNATarget
AK288617.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  |||||||=||||||||||=||
targets:1209   AGUCUUAUAUUAUGAAACGGA   1229

2.5 Oryza sativa Japonica Group cDNA, clone: J090054B15, full insert sequence NA coding protein psRNATarget
XM_015758483.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  ||*||||=|||||||||||||
targets:1111   AGACUUAUAUUAUGAAACAGA   1131

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277697 (LOC107277697), transcript variant X1, mRNA uncharacterized LOC107277697(LOC107277697) coding protein psRNATarget
XM_015795993.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  |||||||=|*|||||||||||
targets:1743   AGUCUUAUAAUAUGAAACAGA   1763

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269384 (LOC9269384), transcript variant X9, mRNA uncharacterized LOC9269384(LOC9269384) coding protein psRNATarget
XM_015795990.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  |||||||=|*|||||||||||
targets:1745   AGUCUUAUAAUAUGAAACAGA   1765

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269384 (LOC9269384), transcript variant X6, mRNA uncharacterized LOC9269384(LOC9269384) coding protein psRNATarget
XM_015795989.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  |||||||=|*|||||||||||
targets:1765   AGUCUUAUAAUAUGAAACAGA   1785

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269384 (LOC9269384), transcript variant X5, mRNA uncharacterized LOC9269384(LOC9269384) coding protein psRNATarget
XM_015795985.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  |||||||=|*|||||||||||
targets:1771   AGUCUUAUAAUAUGAAACAGA   1791

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269384 (LOC9269384), transcript variant X1, mRNA uncharacterized LOC9269384(LOC9269384) coding protein psRNATarget
XM_015795994.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  |||||||=|*|||||||||||
targets:1772   AGUCUUAUAAUAUGAAACAGA   1792

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269384 (LOC9269384), transcript variant X10, mRNA uncharacterized LOC9269384(LOC9269384) coding protein psRNATarget
XM_015795986.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  |||||||=|*|||||||||||
targets:1773   AGUCUUAUAAUAUGAAACAGA   1793

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269384 (LOC9269384), transcript variant X2, mRNA uncharacterized LOC9269384(LOC9269384) coding protein psRNATarget
XM_015795992.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  |||||||=|*|||||||||||
targets:1775   AGUCUUAUAAUAUGAAACAGA   1795

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269384 (LOC9269384), transcript variant X8, mRNA uncharacterized LOC9269384(LOC9269384) coding protein psRNATarget
XM_015795988.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  |||||||=|*|||||||||||
targets:1826   AGUCUUAUAAUAUGAAACAGA   1846

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269384 (LOC9269384), transcript variant X4, mRNA uncharacterized LOC9269384(LOC9269384) coding protein psRNATarget
XM_015784092.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  |||*||||||||||||||=||
targets:1793   AGUGUUACAUUAUGAAACGGA   1813

2.5 PREDICTED: Oryza sativa Japonica Group serine carboxypeptidase-like 50 (LOC4339736), mRNA serine carboxypeptidase-like 50(LOC4339736) coding protein psRNATarget
XM_015795991.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  |||||||=|*|||||||||||
targets:1971   AGUCUUAUAAUAUGAAACAGA   1991

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269384 (LOC9269384), transcript variant X7, mRNA uncharacterized LOC9269384(LOC9269384) coding protein psRNATarget
XM_015795987.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  |||||||=|*|||||||||||
targets:2026   AGUCUUAUAAUAUGAAACAGA   2046

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269384 (LOC9269384), transcript variant X3, mRNA uncharacterized LOC9269384(LOC9269384) coding protein psRNATarget
AK072999.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  |*||||||||||||||||=||
targets:1636   AAUCUUACAUUAUGAAACGGA   1656

1.5 Oryza sativa Japonica Group cDNA clone:J023149N01, full insert sequence NA coding protein psRNATarget
XM_015778732.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  ||||*|||||||||||||=||
targets:413   AGUCAUACAUUAUGAAACGGA   433

2.5 PREDICTED: Oryza sativa Japonica Group hyoscyamine 6-dioxygenase (LOC4337327), mRNA hyoscyamine 6-dioxygenase(LOC4337327) coding protein psRNATarget
XM_015786027.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  ||*||||||||=|||||||||
targets:4343   AGCCUUACAUUGUGAAACAGA   4363

2.5 PREDICTED: Oryza sativa Japonica Group ABC transporter C family member 8 (LOC9267441), mRNA ABC transporter C family member 8(LOC9267441) coding protein psRNATarget
AK065951.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  *|*||||||||||||||||||
targets:2806   UGACUUACAUUAUGAAACAGA   2826

1.0 Oryza sativa Japonica Group cDNA clone:J013045C05, full insert sequence NA coding protein psRNATarget
AK288872.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  *|*||||||||||||||||||
targets:1879   UGACUUACAUUAUGAAACAGA   1899

1.0 Oryza sativa Japonica Group cDNA, clone: J090078I05, full insert sequence NA coding protein psRNATarget
XM_015786576.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  |*|||||=||||||||||=||
targets:1934   AUUCUUAUAUUAUGAAACGGA   1954

2.5 PREDICTED: Oryza sativa Japonica Group cannabidiolic acid synthase-like 2 (LOC4341257), mRNA cannabidiolic acid synthase-like 2(LOC4341257) coding protein psRNATarget
AK072611.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  |*|||||=||||||||||=||
targets:1940   AUUCUUAUAUUAUGAAACGGA   1960

2.5 Oryza sativa Japonica Group cDNA clone:J023133A01, full insert sequence NA coding protein psRNATarget
AK242227.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  **|||||=|||||||||=|||
targets:1417   UCUCUUAUAUUAUGAAAUAGA   1437

2.5 Oryza sativa Japonica Group cDNA, clone: J075175B09, full insert sequence NA coding protein psRNATarget
XM_015782463.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  **|||||=|||||||||=|||
targets:1420   UCUCUUAUAUUAUGAAAUAGA   1440

2.5 PREDICTED: Oryza sativa Japonica Group NAC domain-containing protein 73 (LOC4338032), transcript variant X1, mRNA NAC domain-containing protein 73(LOC4338032) coding protein psRNATarget
XM_015782464.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  **|||||=|||||||||=|||
targets:1424   UCUCUUAUAUUAUGAAAUAGA   1444

2.5 PREDICTED: Oryza sativa Japonica Group NAC domain-containing protein 73 (LOC4338032), transcript variant X2, mRNA NAC domain-containing protein 73(LOC4338032) coding protein psRNATarget
AK288846.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  **|||||=|||||||=|||||
targets:1410   UCUCUUAUAUUAUGAGACAGA   1430

2.5 Oryza sativa Japonica Group cDNA, clone: J090075E22, full insert sequence NA coding protein psRNATarget
AK289081.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  **|||||=||||||||||=||
targets:3020   UCUCUUAUAUUAUGAAACGGA   3040

2.5 Oryza sativa Japonica Group cDNA, clone: J090095E02, full insert sequence NA coding protein psRNATarget
XM_015783507.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  *|*||||||||=|||||||||
targets:868   UGACUUACAUUGUGAAACAGA   888

2.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor ERF014-like (LOC107277887), mRNA ethylene-responsive transcription factor ERF014-like(LOC107277887) coding protein psRNATarget
AK111415.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  *|*|||||||||||||||=||
targets:1157   UGACUUACAUUAUGAAACGGA   1177

2.5 Oryza sativa Japonica Group cDNA clone:002-182-G02, full insert sequence NA coding protein psRNATarget
XM_015763160.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  *|*|||||||||||||||=||
targets:1162   UGACUUACAUUAUGAAACGGA   1182

2.5 PREDICTED: Oryza sativa Japonica Group acidic endochitinase (LOC4325066), mRNA acidic endochitinase(LOC4325066) coding protein psRNATarget
XM_015775040.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  *|*|||||||||||||||=||
targets:1277   UGACUUACAUUAUGAAACGGA   1297

2.5 PREDICTED: Oryza sativa Japonica Group senescence-specific cysteine protease SAG39-like (LOC107280424), mRNA senescence-specific cysteine protease SAG39-like(LOC107280424) coding protein psRNATarget
AK105572.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  *|*||||||||=|||||||||
targets:659   UGACUUACAUUGUGAAACAGA   679

2.5 Oryza sativa Japonica Group cDNA clone:001-128-D03, full insert sequence NA coding protein psRNATarget
AK099623.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  *|*|||||||||||||||=||
targets:188   UGACUUACAUUAUGAAACGGA   208

2.5 Oryza sativa Japonica Group cDNA clone:J013053G12, full insert sequence NA coding protein psRNATarget
AK060965.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  *|*||||||||=|||||||||
targets:1636   UGACUUACAUUGUGAAACAGA   1656

2.5 Oryza sativa Japonica Group cDNA clone:006-202-B11, full insert sequence NA coding protein psRNATarget
XM_015764593.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  *|*||||||||=|||||||||
targets:1636   UGACUUACAUUGUGAAACAGA   1656

2.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 91C1 (LOC4352520), mRNA UDP-glycosyltransferase 91C1(LOC4352520) coding protein psRNATarget
AK121202.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  *|*||||||||=|||||||||
targets:1636   UGACUUACAUUGUGAAACAGA   1656

2.5 Oryza sativa Japonica Group cDNA clone:J023087K24, full insert sequence NA coding protein psRNATarget
XM_015773673.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  *|*|||||||||||||||=||
targets:1845   UGACUUACAUUAUGAAACGGA   1865

2.5 PREDICTED: Oryza sativa Japonica Group cytochrome P450 78A5 (LOC4333404), mRNA cytochrome P450 78A5(LOC4333404) coding protein psRNATarget
XM_015781981.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  *|*|||||||||||||||=||
targets:1399   UGACUUACAUUAUGAAACGGA   1419

2.5 PREDICTED: Oryza sativa Japonica Group dnaJ homolog subfamily B member 1 (LOC9272701), mRNA dnaJ homolog subfamily B member 1(LOC9272701) coding protein psRNATarget
AK288568.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  *|*||||||||=|||||||||
targets:2884   UGACUUACAUUGUGAAACAGA   2904

2.5 Oryza sativa Japonica Group cDNA, clone: J090048B06, full insert sequence NA coding protein psRNATarget
AK289039.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  *|*||||||||=|||||||||
targets:144   UGACUUACAUUGUGAAACAGA   164

2.5 Oryza sativa Japonica Group cDNA, clone: J090091N23, full insert sequence NA coding protein psRNATarget
XM_015778291.1
ncRNA:21   UCAGAAUGUAAUACUUUGUCU   1
  *|*||||||||=|||||||||
targets:138   UGACUUACAUUGUGAAACAGA   158

2.5 PREDICTED: Oryza sativa Japonica Group protein LURP-one-related 6 (LOC4335964), mRNA protein LURP-one-related 6(LOC4335964) coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.