Search result

BaseInfo

ncRNA ID	novel_osa_miR3271
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:5634822-5634958 [+]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1556020
Length	24
Mature sequence(if miRNA)	114 - GUCUCGCGGUUUACUGACGGAUUA - 137
Stem-loop(if miRNA)	--      G C   U             CUU             U   A G   UAAC     GG   U   GUUUGU A UAA UUGUGAGACGAAU   UUGAGCCUAAUUG UCC U AUU    GAUGU  UGC A   |||||| | ||| |||||||||||||   ||||||||||||| ||| | |||    |||||  |||   UAGGCA U AUU GGCGCUCUGCUUA   AAUUCGGAUUAAU AGG A UAA    UUACA  AUG C AU      G C   U             AAU             U   C G   UCGU     -A   A
Stem-loop sequence	GUUUGUGACUAAUUUGUGAGACGAAUCUUUUGAGCCUAAUUGUUCCAUGAUUUAACGAUGUGGUGCUACAGUAAACAUUUGCUAAUGACGGAUUAAUUAGGCUUAAUAAAUUCGUCUCGCGGUUUACUGACGGAUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT837715.1	ncRNA:24   AUUAGGCAGUCAUUUGGCGCUCUG   1   |||||||||=||||||*||||||| targets:1192   UAAUCCGUCGGUAAACAGCGAGAC   1215 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI232H20, full insert sequence	NA	coding protein	psRNATarget
CT837714.1	ncRNA:24   AUUAGGCAGUCAUUUGGCGCUCUG   1   |||||||||=||||||*||||||| targets:1784   UAAUCCGUCGGUAAACAGCGAGAC   1807 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI226D21, full insert sequence	NA	coding protein	psRNATarget
AK120109.1	ncRNA:24   AUUAGGCAGUCAUUUGGCGCUCUG   1   *|||||||||*||||||||||||| targets:1860   GAAUCCGUCAAUAAACCGCGAGAC   1883 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013023O17, full insert sequence	NA	coding protein	psRNATarget
AK067087.1	ncRNA:24   AUUAGGCAGUCAUUUGGCGCUCUG   1   *|||||||||*||||||||||||| targets:1859   GAAUCCGUCAAUAAACCGCGAGAC   1882 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013095A19, full insert sequence	NA	coding protein	psRNATarget
AK072161.1	ncRNA:24   AUUAGGCAGUCAUUUGGCGCUCUG   1   *||||||*||||||||=||||||| targets:1016   GAAUCCGGCAGUAAACUGCGAGAC   1039 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013132P06, full insert sequence	NA	coding protein	psRNATarget
AK288995.1	ncRNA:24   AUUAGGCAGUCAUUUGGCGCUCUG   1   *|||||*|=||||||||||||||| targets:1315   GAAUCCAUUAGUAAACCGCGAGAC   1338 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090088A20, full insert sequence	NA	coding protein	psRNATarget
AK288305.1	ncRNA:24   AUUAGGCAGUCAUUUGGCGCUCUG   1   *|*||||||=|||||||||||||| targets:449   GAUUCCGUCGGUAAACCGCGAGAC   472 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090020F20, full insert sequence	NA	coding protein	psRNATarget
AK289087.1	ncRNA:24   AUUAGGCAGUCAUUUGGCGCUCUG   1   *||||=|||||||||||*|||||| targets:19   GAAUCUGUCAGUAAACCUCGAGAC   42 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090095K03, full insert sequence	NA	coding protein	psRNATarget
AK108855.1	ncRNA:24   AUUAGGCAGUCAUUUGGCGCUCUG   1   **|||=|||||||||||||*|||| targets:2308   GUAUCUGUCAGUAAACCGCAAGAC   2331 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-152-B01, full insert sequence	NA	coding protein	psRNATarget
XM_015784558.1	ncRNA:24   AUUAGGCAGUCAUUUGGCGCUCUG   1   **||||||||*|||||=||||||| targets:4076   GUAUCCGUCAAUAAACUGCGAGAC   4099 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270232 (LOC9270232), mRNA	uncharacterized LOC9270232(LOC9270232)	coding protein	psRNATarget
AK103318.1	ncRNA:24   AUUAGGCAGUCAUUUGGCGCUCUG   1   |||*=||||*|*|||||||||||| targets:1054   UAACUCGUCUGGAAACCGCGAGAC   1077 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033125I08, full insert sequence	NA	coding protein	psRNATarget
XM_015761412.1	ncRNA:24   AUUAGGCAGUCAUUUGGCGCUCUG   1   |||*=||||*|*|||||||||||| targets:532   UAACUCGUCUGGAAACCGCGAGAC   555 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group nucleobase-ascorbate transporter 2 (LOC4325616), mRNA	nucleobase-ascorbate transporter 2(LOC4325616)	coding protein	psRNATarget