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BaseInfo

ncRNA ID	novel_osa_miR3269
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:3539426-3539649 [-]
Reference genome	IRGSP-1.0
Source	SRR2040387;SRR2040390;SRR2040394;SRR2040400;SRR2040402;SRR2040403
Length	24
Mature sequence(if miRNA)	1 - AAUCUAUGUUUAAUACUCUAAAUU - 24
Stem-loop(if miRNA)	--    U             C C    UAU     CC         C  U   -                  C               - G        UUUA   UAUGA   U   UUUA AGUAUUAAACAUA A UAAU   AAAAC  AUUUCAUAA AU AGA CUAAUUCGCGAGACGAAU UUUUGAGUCUAAUUA C CCAUAAUU    CAA     UAC A   |||| ||||||||||||| | ||||   |||||  ||||||||| || ||| |||||||||||||||||| ||||||||||||||| | ||||||||    |||     |||   AAAU UCAUAAUUUGUAU U AUUA   UUUUG  UAAAGUAUU UA UCU GAUUAGGUGCUCUGCUUA AAAAUUCGGAUUAAU G GGUAUUAA    GUU     AUG C UU    C             C A    UCU     AU         -  C   C                  A               U -        --UA   UUCAA   A
Stem-loop sequence	UUUAUAGUAUUAAACAUACACUAAUUAUAAAACCCAUUUCAUAACAUUAGACUAAUUCGCGAGACGAAUCUUUUGAGUCUAAUUACGCCAUAAUUUUUACAAUAUGAUACUACAGUAAACUUUUGAUAAUUAUGGGUUAAUUAGGCUUAAAAAAUUCGUCUCGUGGAUUAGCUCUCAUUUAUGAAAUUAGUUUUUCUAUUAAUCUAUGUUUAAUACUCUAAAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015781196.1	ncRNA:24   UUAAAUCUCAUAAUUUGUAUCUAA   1   ||||||||||||||||||||||*| targets:2009   AAUUUAGAGUAUUAAACAUAGACU   2032 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group GATA transcription factor 6 (LOC4336532), mRNA	GATA transcription factor 6(LOC4336532)	coding protein	psRNATarget
AK288948.1	ncRNA:24   UUAAAUCUCAUAAUUUGUAUCUAA   1   ||||||||||||||||||||||*| targets:2591   AAUUUAGAGUAUUAAACAUAGACU   2614 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090083I09, full insert sequence	NA	coding protein	psRNATarget
AK288241.1	ncRNA:24   UUAAAUCUCAUAAUUUGUAUCUAA   1   ||||||||||||||||||||||*| targets:529   AAUUUAGAGUAUUAAACAUAGACU   552 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090013L13, full insert sequence	NA	coding protein	psRNATarget
AK100185.1	ncRNA:24   UUAAAUCUCAUAAUUUGUAUCUAA   1   |||||=||||||||||||||*||| targets:667   AAUUUGGAGUAUUAAACAUACAUU   690 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023031M16, full insert sequence	NA	coding protein	psRNATarget
AK102033.1	ncRNA:24   UUAAAUCUCAUAAUUUGUAUCUAA   1   |||||=||||||||||||||||*| targets:287   AAUUUGGAGUAUUAAACAUAGACU   310 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033081B10, full insert sequence	NA	coding protein	psRNATarget
AK240978.1	ncRNA:24   UUAAAUCUCAUAAUUUGUAUCUAA   1   ||||-|||||=|||||||||||*| targets:353   AAUU-AGAGUGUUAAACAUAGACU   375 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065048J02, full insert sequence	NA	coding protein	psRNATarget