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BaseInfo

ncRNA ID	novel_osa_miR3263
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:35461541-35461674 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1556020
Length	24
Mature sequence(if miRNA)	1 - AUAUGGGCAAUGCUAGAAUGACUU - 24
Stem-loop(if miRNA)	--GA             A  A    --                        C             AA  A     CAUUCUAGCAUUG CC CAUG  CAUAUAGAUGUUAAUGAAUCUAGA AUAGACAUAUGUU  UG A     ||||||||||||| || ||||  |||||||||||||||||||||||| |||||||||||||  ||     GUAAGAUCGUAAC GG GUAU  GUAUAUUUAUAAUUACUUAGAUCU UAUCUGUAUACAA  AC U UUCA             -  -    AA                        A             --  C
Stem-loop sequence	GACAUUCUAGCAUUGACCACAUGCAUAUAGAUGUUAAUGAAUCUAGACAUAGACAUAUGUUAAUGAAUCCAAACAUAUGUCUAUAUCUAGAUUCAUUAAUAUUUAUAUGAAUAUGGGCAAUGCUAGAAUGACUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK099623.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   ||||||||||||||||*||||||| targets:84   AAGUCAUUCUAGCAUUUCCCAUAU   107 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013053G12, full insert sequence	NA	coding protein	psRNATarget
AK070550.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   ||||||||||||||||*||||||| targets:2615   AAGUCAUUCUAGCAUUUCCCAUAU   2638 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023061C04, full insert sequence	NA	coding protein	psRNATarget
XM_015791767.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   ||||||||=||||||||||||*|| targets:1656   AAGUCAUUUUAGCAUUGCCCACAU   1679 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g02370, mitochondrial (LOC4325784), mRNA	pentatricopeptide repeat-containing protein At1g02370, mitochondrial(LOC4325784)	coding protein	psRNATarget
AK064623.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   ||||||||=||||||||||||*|| targets:1662   AAGUCAUUUUAGCAUUGCCCACAU   1685 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-113-E04, full insert sequence	NA	coding protein	psRNATarget
CT836048.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   |||*|*|||||||||||||=|||| targets:445   AAGACUUUCUAGCAUUGCCUAUAU   468 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA023O09, full insert sequence	NA	coding protein	psRNATarget
AK072622.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   ||*|||||=|||||||||*||||| targets:417   AAAUCAUUUUAGCAUUGCGCAUAU   440 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023125G21, full insert sequence	NA	coding protein	psRNATarget
XM_015755249.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   |||*|*|||||||||||=|||||| targets:763   AAGACUUUCUAGCAUUGUCCAUAU   786 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4347372 (LOC4347372), mRNA	uncharacterized LOC4347372(LOC4347372)	coding protein	psRNATarget
CT833624.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   |||*|*|||||||||||=|||||| targets:1039   AAGACUUUCUAGCAUUGUCCAUAU   1062 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN046D04, full insert sequence	NA	coding protein	psRNATarget
AK105572.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   |||*||||=|||||||*||||||| targets:573   AAGCCAUUUUAGCAUUUCCCAUAU   596 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-128-D03, full insert sequence	NA	coding protein	psRNATarget
AK068294.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   |||*|*|||||||||||=|||||| targets:1817   AAGACUUUCUAGCAUUGUCCAUAU   1840 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013148J04, full insert sequence	NA	coding protein	psRNATarget
AK108630.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   |||*|*||||||||||||=||||| targets:1594   AAGACUUUCUAGCAUUGCUCAUAU   1617 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-147-F01, full insert sequence	NA	coding protein	psRNATarget
XM_015763482.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   |||*|*||||||||||||=||||| targets:1628   AAGACUUUCUAGCAUUGCUCAUAU   1651 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4352431 (LOC4352431), mRNA	uncharacterized LOC4352431(LOC4352431)	coding protein	psRNATarget
CT831361.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   |||*|*||||||||||||=||||| targets:1957   AAGACUUUCUAGCAUUGCUCAUAU   1980 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI207J06, full insert sequence	NA	coding protein	psRNATarget
AK072999.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   |||*|*||||||||||||=||||| targets:1532   AAGACUUUCUAGCAUUGCUCAUAU   1555 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023149N01, full insert sequence	NA	coding protein	psRNATarget
XM_015786027.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   |||*|*|||||||||||||=|||| targets:4277   AAGACCUUCUAGCAUUGCCUAUAU   4300 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ABC transporter C family member 8 (LOC9267441), mRNA	ABC transporter C family member 8(LOC9267441)	coding protein	psRNATarget
CT835594.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   |||*|*|||||||||||||||*|| targets:383   AAGACUUUCUAGCAUUGCCCACAU   406 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN021O24, full insert sequence	NA	coding protein	psRNATarget
AK059715.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   |||*|*|||||*|||||||||||| targets:30   AAGACUUUCUAACAUUGCCCAUAU   53 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-032-F10, full insert sequence	NA	coding protein	psRNATarget
XM_015795868.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   |||*|*|||||||||||||||*|| targets:1160   AAGACUUUCUAGCAUUGCCCACAU   1183 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277671 (LOC107277671), mRNA	uncharacterized LOC107277671(LOC107277671)	coding protein	psRNATarget
XM_015765335.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   |||*|*|||||||||||||||*|| targets:1195   AAGACUUUCUAGCAUUGCCCACAU   1218 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group light-inducible protein CPRF2-like (LOC107276775), transcript variant X2, mRNA	light-inducible protein CPRF2-like(LOC107276775)	coding protein	psRNATarget
CT837661.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   |||*|*|||||||||||||||*|| targets:1195   AAGACUUUCUAGCAUUGCCCACAU   1218 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN063K17, full insert sequence	NA	coding protein	psRNATarget
AK066283.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   |||*|*|||||||||||||||*|| targets:947   AAGACUUUCUAGCAUUGCCCACAU   970 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013063D15, full insert sequence	NA	coding protein	psRNATarget
XM_015765333.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   |||*|*|||||||||||||||*|| targets:2094   AAGACUUUCUAGCAUUGCCCACAU   2117 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group light-inducible protein CPRF2-like (LOC107276775), transcript variant X1, mRNA	light-inducible protein CPRF2-like(LOC107276775)	coding protein	psRNATarget
XM_015765337.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   |||*|*|||||||||||||||*|| targets:2709   AAGACUUUCUAGCAUUGCCCACAU   2732 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group light-inducible protein CPRF2-like (LOC107276775), transcript variant X5, mRNA	light-inducible protein CPRF2-like(LOC107276775)	coding protein	psRNATarget
AK119344.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   |||*|*|||||||||||||||*|| targets:1163   AAGACUUUCUAGCAUUGCCCACAU   1186 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-131-E01, full insert sequence	NA	coding protein	psRNATarget
XM_015787709.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   |||*|*|||||||||||||||*|| targets:531   AAGACUUUCUAGCAUUGCCCACAU   554 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340081 (LOC4340081), transcript variant X1, mRNA	uncharacterized LOC4340081(Os06g0142000)	coding protein	psRNATarget
XM_015787712.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   |||*|*|||||||||||||||*|| targets:531   AAGACUUUCUAGCAUUGCCCACAU   554 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340081 (LOC4340081), transcript variant X4, mRNA	uncharacterized LOC4340081(Os06g0142000)	coding protein	psRNATarget
XM_015769168.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   |||*|*|||||||||||||||*|| targets:2672   AAGACUUUCUAGCAUUGCCCACAU   2695 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable splicing factor 3A subunit 1 (LOC4328860), transcript variant X3, mRNA	probable splicing factor 3A subunit 1(LOC4328860)	coding protein	psRNATarget
XM_015763234.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   |||*|*|||||||||||||||*|| targets:6282   AAGACUUUCUAGCAUUGCCCACAU   6305 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group F-box protein At5g25290 (LOC4326973), transcript variant X1, mRNA	F-box protein At5g25290(LOC4326973)	coding protein	psRNATarget
XM_015766553.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   |||*|*||||||||||*||||||| targets:527   AAGACUUUCUAGCAUUUCCCAUAU   550 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X7, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766552.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   |||*|*||||||||||*||||||| targets:1717   AAGACUUUCUAGCAUUUCCCAUAU   1740 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X6, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766549.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   |||*|*||||||||||*||||||| targets:2331   AAGACUUUCUAGCAUUUCCCAUAU   2354 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X3, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766551.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   |||*|*||||||||||*||||||| targets:2697   AAGACUUUCUAGCAUUUCCCAUAU   2720 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X5, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766550.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   |||*|*||||||||||*||||||| targets:2697   AAGACUUUCUAGCAUUUCCCAUAU   2720 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X4, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766546.1	ncRNA:24   UUCAGUAAGAUCGUAACGGGUAUA   1   |||*|*||||||||||*||||||| targets:2697   AAGACUUUCUAGCAUUUCCCAUAU   2720 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X1, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget