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BaseInfo

ncRNA ID	novel_osa_miR3259
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:35461545-35461670 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1556020;SRR1654491
Length	24
Mature sequence(if miRNA)	1 - AUGAAUAUGGGCAAUGCUAGAAUG - 24
Stem-loop(if miRNA)	--           A  A    --                        C             AA  A   UUCUAGCAUUG CC CAUG  CAUAUAGAUGUUAAUGAAUCUAGA AUAGACAUAUGUU  UG A   ||||||||||| || ||||  |||||||||||||||||||||||| |||||||||||||  ||   AAGAUCGUAAC GG GUAU  GUAUAUUUAUAAUUACUUAGAUCU UAUCUGUAUACAA  AC U GU           -  -    AA                        A             --  C
Stem-loop sequence	UUCUAGCAUUGACCACAUGCAUAUAGAUGUUAAUGAAUCUAGACAUAGACAUAUGUUAAUGAAUCCAAACAUAUGUCUAUAUCUAGAUUCAUUAAUAUUUAUAUGAAUAUGGGCAAUGCUAGAAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK099623.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   ||||||||||||*||||||||||| targets:88   CAUUCUAGCAUUUCCCAUAUUCAU   111 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013053G12, full insert sequence	NA	coding protein	psRNATarget
AK070550.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   ||||||||||||*||||||||||| targets:2619   CAUUCUAGCAUUUCCCAUAUUCAU   2642 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023061C04, full insert sequence	NA	coding protein	psRNATarget
CT833624.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   |*|||||||||||=|||||||||| targets:1043   CUUUCUAGCAUUGUCCAUAUUCAU   1066 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN046D04, full insert sequence	NA	coding protein	psRNATarget
AK072999.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   |*||||||||||||=||||||||| targets:1536   CUUUCUAGCAUUGCUCAUAUUCAU   1559 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023149N01, full insert sequence	NA	coding protein	psRNATarget
AK288961.1	ncRNA:24   GUAA---GAUCGUAACGGGUAUAAGUA   1   ||||---=|=||||||||||||||||| targets:1465   CAUUACAUUGGCAUUGCCCAUAUUCAU   1491 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090084F09, full insert sequence	NA	coding protein	psRNATarget
XM_015786027.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   |*|||||||||||||=|||||||* targets:4281   CCUUCUAGCAUUGCCUAUAUUCAG   4304 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ABC transporter C family member 8 (LOC9267441), mRNA	ABC transporter C family member 8(LOC9267441)	coding protein	psRNATarget
AK059715.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   |*|||||*|||||||||||||||| targets:34   CUUUCUAACAUUGCCCAUAUUCAU   57 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:001-032-F10, full insert sequence	NA	coding protein	psRNATarget
XM_015795868.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   |*|||||||||||||||*|||||| targets:1164   CUUUCUAGCAUUGCCCACAUUCAU   1187 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277671 (LOC107277671), mRNA	uncharacterized LOC107277671(LOC107277671)	coding protein	psRNATarget
XM_015765335.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   |*|||||||||||||||*|||||| targets:1199   CUUUCUAGCAUUGCCCACAUUCAU   1222 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group light-inducible protein CPRF2-like (LOC107276775), transcript variant X2, mRNA	light-inducible protein CPRF2-like(LOC107276775)	coding protein	psRNATarget
CT837661.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   |*|||||||||||||||*|||||| targets:1199   CUUUCUAGCAUUGCCCACAUUCAU   1222 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN063K17, full insert sequence	NA	coding protein	psRNATarget
AK066283.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   |*|||||||||||||||*|||||| targets:951   CUUUCUAGCAUUGCCCACAUUCAU   974 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013063D15, full insert sequence	NA	coding protein	psRNATarget
XM_015765333.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   |*|||||||||||||||*|||||| targets:2098   CUUUCUAGCAUUGCCCACAUUCAU   2121 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group light-inducible protein CPRF2-like (LOC107276775), transcript variant X1, mRNA	light-inducible protein CPRF2-like(LOC107276775)	coding protein	psRNATarget
XM_015757225.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   |*|||||||||||||||*|||||| targets:2290   CUUUCUAGCAUUGCCCACAUUCAU   2313 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g08610 (LOC4348896), mRNA	pentatricopeptide repeat-containing protein At1g08610(LOC4348896)	coding protein	psRNATarget
AK103437.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   |*|||||||||||||||*|||||| targets:2362   CUUUCUAGCAUUGCCCACAUUCAU   2385 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033129C05, full insert sequence	NA	coding protein	psRNATarget
AK119344.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   |*|||||||||||||||*|||||| targets:1167   CUUUCUAGCAUUGCCCACAUUCAU   1190 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-131-E01, full insert sequence	NA	coding protein	psRNATarget
XM_015787709.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   |*|||||||||||||||*|||||| targets:535   CUUUCUAGCAUUGCCCACAUUCAU   558 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340081 (LOC4340081), transcript variant X1, mRNA	uncharacterized LOC4340081(Os06g0142000)	coding protein	psRNATarget
AK243383.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   |*||||||||||*||||||||||| targets:1153   CUUUCUAGCAUUACCCAUAUUCAU   1176 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J100063E02, full insert sequence	NA	coding protein	psRNATarget
XM_015787712.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   |*|||||||||||||||*|||||| targets:535   CUUUCUAGCAUUGCCCACAUUCAU   558 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340081 (LOC4340081), transcript variant X4, mRNA	uncharacterized LOC4340081(Os06g0142000)	coding protein	psRNATarget
XM_015769168.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   |*|||||||||||||||*|||||| targets:2676   CUUUCUAGCAUUGCCCACAUUCAU   2699 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable splicing factor 3A subunit 1 (LOC4328860), transcript variant X3, mRNA	probable splicing factor 3A subunit 1(LOC4328860)	coding protein	psRNATarget
XM_015763234.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   |*|||||||||||||||*|||||| targets:6286   CUUUCUAGCAUUGCCCACAUUCAU   6309 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group F-box protein At5g25290 (LOC4326973), transcript variant X1, mRNA	F-box protein At5g25290(LOC4326973)	coding protein	psRNATarget
XM_015766553.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   |*||||||||||*||||||||||| targets:531   CUUUCUAGCAUUUCCCAUAUUCAU   554 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X7, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766552.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   |*||||||||||*||||||||||| targets:1721   CUUUCUAGCAUUUCCCAUAUUCAU   1744 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X6, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766549.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   |*||||||||||*||||||||||| targets:2335   CUUUCUAGCAUUUCCCAUAUUCAU   2358 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X3, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766551.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   |*||||||||||*||||||||||| targets:2701   CUUUCUAGCAUUUCCCAUAUUCAU   2724 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X5, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766550.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   |*||||||||||*||||||||||| targets:2701   CUUUCUAGCAUUUCCCAUAUUCAU   2724 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X4, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766546.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   |*||||||||||*||||||||||| targets:2701   CUUUCUAGCAUUUCCCAUAUUCAU   2724 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X1, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
AK242153.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   =*||||||||||*||||||||||| targets:1041   UUUUCUAGCAUUCCCCAUAUUCAU   1064 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J075153O10, full insert sequence	NA	coding protein	psRNATarget
CT832958.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   |*||||||=||||||||*|||||| targets:834   CUUUCUAGUAUUGCCCACAUUCAU   857 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109F21, full insert sequence	NA	coding protein	psRNATarget
AK065332.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   |*||||||=||||||||*|||||| targets:837   CUUUCUAGUAUUGCCCACAUUCAU   860 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013000K10, full insert sequence	NA	coding protein	psRNATarget
XM_015767952.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   |*|||||*||||||=||||||||| targets:1792   CUUUCUAACAUUGCUCAUAUUCAU   1815 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable galacturonosyltransferase 9 (LOC4330716), mRNA	probable galacturonosyltransferase 9(LOC4330716)	coding protein	psRNATarget
XM_015766247.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   |*||=||||||||||||*|||||| targets:2498   CUUUUUAGCAUUGCCCACAUUCAU   2521 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative receptor protein kinase ZmPK1 (LOC107277300), mRNA	putative receptor protein kinase ZmPK1(LOC107277300)	coding protein	psRNATarget
AK101666.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   |*||||||=||||||||*|||||| targets:1594   CUUUCUAGUAUUGCCCACAUUCAU   1617 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033057N11, full insert sequence	NA	coding protein	psRNATarget
AK106502.1	ncRNA:24   GUAAGAUCGUAACGGGUAUAAGUA   1   |*||=||*|||||||||||||=|| targets:1454   CUUUUUAACAUUGCCCAUAUUUAU   1477 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-105-F04, full insert sequence	NA	coding protein	psRNATarget