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BaseInfo

ncRNA ID	novel_osa_miR3258
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:17214484-17214539 [-]
Reference genome	IRGSP-1.0
Source	SRR2040387
Length	24
Mature sequence(if miRNA)	33 - AGUGAUGUUAAUGAAUCUAGACAU - 56
Stem-loop(if miRNA)	--                     CAUAU   AGUGAUGUUAAUGAAUCUAGA     A   |||||||||||||||||||||   UCACUACAAUUACUUAGAUCU     U UA                     AUCUA
Stem-loop sequence	AGUGAUGUUAAUGAAUCUAGACAUAUAUAUCUAUCUAGAUUCAUUAACAUCACUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015789040.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   ||||||||||||||||||||||*| targets:4813   AUGUCUAGAUUCAUUAACAUCAAU   4836 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266525 (LOC9266525), transcript variant X1, mRNA	uncharacterized LOC9266525(LOC9266525)	coding protein	psRNATarget
AK121342.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   ||||||||||||||||||||||*| targets:4647   AUGUCUAGAUUCAUUAACAUCAAU   4670 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023121A11, full insert sequence	NA	coding protein	psRNATarget
XM_015778291.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   ||||||||||||||||||||||*| targets:92   AUGUCUAGAUUCAUUAACAUCAAU   115 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group protein LURP-one-related 6 (LOC4335964), mRNA	protein LURP-one-related 6(LOC4335964)	coding protein	psRNATarget
AK289039.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   ||||||||||||||||||||||*| targets:98   AUGUCUAGAUUCAUUAACAUCAAU   121 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090091N23, full insert sequence	NA	coding protein	psRNATarget
XM_015780916.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   ||||||||||||||||||||||*| targets:4795   AUGUCUAGAUUCAUUAACAUCAAU   4818 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X1, mRNA	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691)	coding protein	psRNATarget
XM_015780918.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   ||||||||||||||||||||||*| targets:4786   AUGUCUAGAUUCAUUAACAUCAAU   4809 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X3, mRNA	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691)	coding protein	psRNATarget
XM_015780917.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   ||||||||||||||||||||||*| targets:4737   AUGUCUAGAUUCAUUAACAUCAAU   4760 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X2, mRNA	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691)	coding protein	psRNATarget
XM_015764779.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   ||||||||||||||||||||||*| targets:4454   AUGUCUAGAUUCAUUAACAUCAAU   4477 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X4, mRNA	putative disease resistance RPP13-like protein 3(LOC4352543)	coding protein	psRNATarget
AK067512.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   ||||||||||||||||||||||*| targets:2331   AUGUCUAGAUUCAUUAACAUCAAU   2354 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013109G08, full insert sequence	NA	coding protein	psRNATarget
AK288214.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   ||||||||||||||||||||||*| targets:2667   AUGUCUAGAUUCAUUAACAUCAAU   2690 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090010G11, full insert sequence	NA	coding protein	psRNATarget
XM_015764777.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   ||||||||||||||||||||||*| targets:3620   AUGUCUAGAUUCAUUAACAUCAAU   3643 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X2, mRNA	putative disease resistance RPP13-like protein 3(LOC4352543)	coding protein	psRNATarget
AK070890.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   ||||||||||||||||||||||*| targets:965   AUGUCUAGAUUCAUUAACAUCAAU   988 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023069D18, full insert sequence	NA	coding protein	psRNATarget
XM_015764776.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   ||||||||||||||||||||||*| targets:3384   AUGUCUAGAUUCAUUAACAUCAAU   3407 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X1, mRNA	putative disease resistance RPP13-like protein 3(LOC4352543)	coding protein	psRNATarget
XM_015764778.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   ||||||||||||||||||||||*| targets:3379   AUGUCUAGAUUCAUUAACAUCAAU   3402 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X3, mRNA	putative disease resistance RPP13-like protein 3(LOC4352543)	coding protein	psRNATarget
XM_015759228.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   ||||||||||||||||||||||*| targets:2144   AUGUCUAGAUUCAUUAACAUCAAU   2167 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group MLO-like protein 9 (LOC4349258), mRNA	MLO-like protein 9(LOC4349258)	coding protein	psRNATarget
AK072272.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   ||||||||||||||||||||||*| targets:1884   AUGUCUAGAUUCAUUAACAUCAAU   1907 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023004C21, full insert sequence	NA	coding protein	psRNATarget
AK121202.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   ||||||||||||||||||||||*| targets:1590   AUGUCUAGAUUCAUUAACAUCAAU   1613 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023087K24, full insert sequence	NA	coding protein	psRNATarget
XM_015764593.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   ||||||||||||||||||||||*| targets:1590   AUGUCUAGAUUCAUUAACAUCAAU   1613 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 91C1 (LOC4352520), mRNA	UDP-glycosyltransferase 91C1(LOC4352520)	coding protein	psRNATarget
AK060965.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   ||||||||||||||||||||||*| targets:1590   AUGUCUAGAUUCAUUAACAUCAAU   1613 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:006-202-B11, full insert sequence	NA	coding protein	psRNATarget
XM_015792529.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   ||||||||||||||||||||||*| targets:1   AUGUCUAGAUUCAUUAACAUCAAU   24 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group dehydrodolichyl diphosphate synthase 6 (LOC4343863), transcript variant X1, mRNA	dehydrodolichyl diphosphate synthase 6(LOC4343863)	coding protein	psRNATarget
AK069402.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   ||||||||||||||||||||||*| targets:1225   AUGUCUAGAUUCAUUAACAUCAAU   1248 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023011C17, full insert sequence	NA	coding protein	psRNATarget
CT837490.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   ||||||||||||||||||||||*| targets:894   AUGUCUAGAUUCAUUAACAUCAAU   917 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109F07, full insert sequence	NA	coding protein	psRNATarget
CT831392.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   ||||||||||||||||||||||*| targets:469   AUGUCUAGAUUCAUUAACAUCAAU   492 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN035F20, full insert sequence	NA	coding protein	psRNATarget
AK240884.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   ||||||||||||||||||||||*| targets:475   AUGUCUAGAUUCAUUAACAUCAAU   498 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065028F04, full insert sequence	NA	coding protein	psRNATarget
CT835159.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   ||||||||||||||||||||||*| targets:263   AUGUCUAGAUUCAUUAACAUCAAU   286 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI015J24, full insert sequence	NA	coding protein	psRNATarget
XM_015764394.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   ||||=|||||||||||||||||*| targets:1331   AUGUUUAGAUUCAUUAACAUCAAU   1354 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group vesicle-associated membrane protein 721 (LOC4352920), mRNA	vesicle-associated membrane protein 721(LOC4352920)	coding protein	psRNATarget
CT834624.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   ||||=|||||||||||||||||*| targets:1139   AUGUUUAGAUUCAUUAACAUCAAU   1162 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA040F18, full insert sequence	NA	coding protein	psRNATarget
AK065951.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   *|||||||||||||||||||||** targets:2760   UUGUCUAGAUUCAUUAACAUCAAC   2783 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013045C05, full insert sequence	NA	coding protein	psRNATarget
XM_015771203.1	ncRNA:24   UACA-GAUCUAAGUAAUUGUAGUGA   1   ||||-||||||||||||||||||*| targets:66   AUGUUCUAGAUUCAUUAACAUCAAU   90 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278672 (LOC107278672), transcript variant X2, mRNA	uncharacterized LOC107278672(LOC107278672)	coding protein	psRNATarget
XM_015771202.1	ncRNA:24   UACA-GAUCUAAGUAAUUGUAGUGA   1   ||||-||||||||||||||||||*| targets:66   AUGUUCUAGAUUCAUUAACAUCAAU   90 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278672 (LOC107278672), transcript variant X1, mRNA	uncharacterized LOC107278672(LOC107278672)	coding protein	psRNATarget
AK099623.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   ||*|||||||||||||||||||*| targets:142   AUAUCUAGAUUCAUUAACAUCAAU   165 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013053G12, full insert sequence	NA	coding protein	psRNATarget
CT829098.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   ||*|||||||||||||||||||*| targets:779   AUAUCUAGAUUCAUUAACAUCAAU   802 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI025D23, full insert sequence	NA	coding protein	psRNATarget
XM_015767758.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   ||||=|*|||||||||||||||*| targets:3806   AUGUUUUGAUUCAUUAACAUCAAU   3829 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription factor bHLH68 (LOC4325885), transcript variant X3, mRNA	transcription factor bHLH68(LOC4325885)	coding protein	psRNATarget
AK288871.1	ncRNA:24   UACA------GAUCUAAGUAAUUGUAGUGA   1   ||||------||||||||||||||||||** targets:4334   AUGUAUCUAUCUAGAUUCAUUAACAUCAAC   4363 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090078G09, full insert sequence	NA	coding protein	psRNATarget
XM_015787270.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   *|*|||||||||||||||||||*| targets:1598   CUAUCUAGAUUCAUUAACAUCAAU   1621 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4341670 (LOC4341670), transcript variant X1, mRNA	uncharacterized LOC4341670(Os06g0647801)	coding protein	psRNATarget
AK288952.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   *|*|||||||||||||||||||*| targets:287   CUAUCUAGAUUCAUUAACAUCAAU   310 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090083K12, full insert sequence	NA	coding protein	psRNATarget
AK072906.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   *|*|||||||||||||||||||*| targets:2778   CUAUCUAGAUUCAUUAACAUCAAU   2801 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023147K18, full insert sequence	NA	coding protein	psRNATarget
AK106303.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   *|*|||||||||||||||||||*| targets:1604   CUAUCUAGAUUCAUUAACAUCAAU   1627 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-101-C07, full insert sequence	NA	coding protein	psRNATarget
XM_015760082.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   *|*|||||||||||||||||||*| targets:1551   CUAUCUAGAUUCAUUAACAUCAAU   1574 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4350193), mRNA	putative protease Do-like 14(LOC4350193)	coding protein	psRNATarget
XM_015782137.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   *|*|||||||||||||||||||*| targets:1571   CUAUCUAGAUUCAUUAACAUCAAU   1594 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339294 (LOC4339294), mRNA	uncharacterized LOC4339294(LOC4339294)	coding protein	psRNATarget
AK287994.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   *|*|||||||||||||||||||*| targets:1522   CUAUCUAGAUUCAUUAACAUCAAU   1545 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J075099E21, full insert sequence	NA	coding protein	psRNATarget
XM_015783671.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   *|*|||||||||||||||||||*| targets:1041   CUAUCUAGAUUCAUUAACAUCAAU   1064 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339170 (LOC4339170), mRNA	uncharacterized LOC4339170(LOC4339170)	coding protein	psRNATarget
XM_015761241.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   *|*|||||||||||||||||||*| targets:855   CUAUCUAGAUUCAUUAACAUCAAU   878 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group dirigent protein 1 (LOC4350074), mRNA	dirigent protein 1(LOC4350074)	coding protein	psRNATarget
CT837528.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   *|*|||||||||||||||||||*| targets:885   CUAUCUAGAUUCAUUAACAUCAAU   908 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN037B21, full insert sequence	NA	coding protein	psRNATarget
CT837577.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   *|*|||||||||||||||||||*| targets:261   CUAUCUAGAUUCAUUAACAUCAAU   284 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN009E14, full insert sequence	NA	coding protein	psRNATarget
AK109758.1	ncRNA:24   UACAGAUCUAAGUAAUUGUAGUGA   1   ***|||||||||||||||||||*| targets:1701   CCAUCUAGAUUCAUUAACAUCAAU   1724 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-146-G06, full insert sequence	NA	coding protein	psRNATarget
AK120281.1	ncRNA:24   UACA--GAUCUAAGUAAUUGUAGUGA   1   ||*|--||||||||||||||||||*| targets:3455   AUCUAGCUAGAUUCAUUAACAUCAAU   3480 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013049I08, full insert sequence	NA	coding protein	psRNATarget
AK110888.1	ncRNA:24   UAC--AGAUCUAAGUAAUUGUAGUGA   1   |||--||||*||||||||||||||*| targets:1234   AUGAAUCUAAAUUCAUUAACAUCAAU   1259 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-172-H04, full insert sequence	NA	coding protein	psRNATarget