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BaseInfo

ncRNA ID	novel_osa_miR3255
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:43199118-43199324 [-]
Reference genome	IRGSP-1.0
Source	SRR2040387
Length	24
Mature sequence(if miRNA)	184 - AUUAAACGUAGACUAUUGAUAAAA - 207
Stem-loop(if miRNA)	--                 G       CC   CA    CCCU  A        C A       C A               CC         C     GAUGU   AUUAAACGUAGACUAUU AUAAAAC  AUU  AUAA    GA CUAAUUCG G GACAAAU U UUGAGUCUAAUUAAU  AUGAUUAGC UAUGU     U   ||||||||||||||||| |||||||  |||  ||||    || |||||||| | ||||||| | |||||||||||||||  ||||||||| |||||     A   UAAUUUGUAUCUGAUGA UAUUUUG  UAA  UAUU    CU GAUUAAGC C CUGUUUA A AAUUCGGAUUAAUUA  UAUUAAUCG AUACA     C CA                 A       AU   UG    UACU  C        A A       A A               AA         C     AAUGA
Stem-loop sequence	AUUAAACGUAGACUAUUGAUAAAACCCAUUCAAUAACCCUGAACUAAUUCGCGAGACAAAUCUAUUGAGUCUAAUUAAUCCAUGAUUAGCCUAUGUGAUGUUACAGUAAACAUACGCUAAUUAUAAAUUAAUUAGGCUUAAAAAAUUUGUCACACGAAUUAGCUCUCAUUUAUGUAAUUAGUUUUAUAAGUAGUCUAUGUUUAAUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288873.1	ncRNA:24   AAAAUAGUUAUCAGAUGCAAAUUA   1   ||||||=||||||||||||||||| targets:5665   UUUUAUUAAUAGUCUACGUUUAAU   5688 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090078I24, full insert sequence	NA	coding protein	psRNATarget
XM_015767213.1	ncRNA:24   AAAAUAGUUAUCAGAUGCAAAUUA   1   ||||||=||||||||||||||||| targets:1989   UUUUAUUAAUAGUCUACGUUUAAU   2012 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group beclin-1-like protein (LOC4324394), transcript variant X1, mRNA	beclin-1-like protein(LOC4324394)	coding protein	psRNATarget
XM_015767222.1	ncRNA:24   AAAAUAGUUAUCAGAUGCAAAUUA   1   ||||||=||||||||||||||||| targets:1971   UUUUAUUAAUAGUCUACGUUUAAU   1994 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group beclin-1-like protein (LOC4324394), transcript variant X2, mRNA	beclin-1-like protein(LOC4324394)	coding protein	psRNATarget
AK101033.1	ncRNA:24   AAAAUAGUUAUCAGAUGCAAAUUA   1   ||||||=||||||||||||||||| targets:1972   UUUUAUUAAUAGUCUACGUUUAAU   1995 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023150N19, full insert sequence	NA	coding protein	psRNATarget
XM_015794883.1	ncRNA:24   AAAAUAGUUAUCAGAUGCAAAUUA   1   ||||||=||||||||||||||||| targets:140   UUUUAUUAAUAGUCUACGUUUAAU   163 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107282066 (LOC107282066), mRNA	uncharacterized LOC107282066(LOC107282066)	coding protein	psRNATarget
CT833304.1	ncRNA:24   AAAAUAGUUAUCAGAUGCAAAUUA   1   ||||||=||||||||||||||||| targets:1371   UUUUAUUAAUAGUCUACGUUUAAU   1394 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN010D02, full insert sequence	NA	coding protein	psRNATarget
AK288868.1	ncRNA:24   AAAAUAGUUAUCAGAUGCAAAUUA   1   ||||||==|||||||||||||||| targets:4804   UUUUAUUGAUAGUCUACGUUUAAU   4827 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090078E01, full insert sequence	NA	coding protein	psRNATarget
AK288737.1	ncRNA:24   AAAAUAGUUAUCAGAUGCAAAUUA   1   ||||||=|||||||||||*||||| targets:1517   UUUUAUUAAUAGUCUACGGUUAAU   1540 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090063M20, full insert sequence	NA	coding protein	psRNATarget
AK067578.1	ncRNA:24   AAAAUAGUUAUCAGAUGCAAAUUA   1   ||||||=|*||||||||||||||| targets:1805   UUUUAUUAUUAGUCUACGUUUAAU   1828 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013110M15, full insert sequence	NA	coding protein	psRNATarget
AK288236.1	ncRNA:24   AAAAUAGUUAUCAGAUGCAAAUUA   1   ||||=|||*||||||||||||||| targets:1888   UUUUGUCAUUAGUCUACGUUUAAU   1911 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090013E07, full insert sequence	NA	coding protein	psRNATarget
XM_015762321.1	ncRNA:24   AAAAUAGUUAUCAGAUGCAAAUUA   1   ||||||||=||*|||||||||||| targets:1113   UUUUAUCAGUAAUCUACGUUUAAU   1136 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription initiation factor TFIID subunit 13 (LOC9268703), mRNA	transcription initiation factor TFIID subunit 13(LOC9268703)	coding protein	psRNATarget
XM_015764825.1	ncRNA:24   AAAAUAGUUAUCAGAUGCAAAUUA   1   ||||=|=|*||||||||||||||| targets:108   UUUUGUUAUUAGUCUACGUUUAAU   131 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group pre-mRNA-splicing factor CWC22 homolog (LOC4351904), mRNA	pre-mRNA-splicing factor CWC22 homolog(LOC4351904)	coding protein	psRNATarget
AM778048.1	ncRNA:24   AAAAUAGUUAUCAGAUGCAAAUUA   1   ||||=|=|*||||||||||||||| targets:108   UUUUGUUAUUAGUCUACGUUUAAU   131 Target Full Sequence	2.0	Oryza sativa Japonica Group mRNA for putative pre-mRNA-splicing factor cwc-22 (Os12g15420 gene), cultivar Azucena	NA	coding protein	psRNATarget
AK119753.1	ncRNA:24   AAAAUAGUUAUCAGAUGCAAAUUA   1   ||||=|=|*||||||||||||||| targets:2062   UUUUGUUAUUAGUCUACGUUUAAU   2085 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-167-E02, full insert sequence	NA	coding protein	psRNATarget
CT837862.1	ncRNA:24   AAAAUAGUUAUCAGAUGCAAAUUA   1   ||||=|=|*||||||||||||||| targets:951   UUUUGUUACUAGUCUACGUUUAAU   974 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA123J02, full insert sequence	NA	coding protein	psRNATarget