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BaseInfo

ncRNA ID novel_osa_miR3253
Species Oryza sativa
Class miRNA
Genome position Chr1:36199104-36199191 [-]
Reference genome IRGSP-1.0
Source SRR1555747;SRR2098560;SRR1556020
Length 24
Mature sequence(if miRNA) 1 - AUCUAUAUGAAUGUGGACAAUGUU - 24
Stem-loop(if miRNA) --  C  CU            U  AC        A        U
  CA UG  CAUAUUUAUAUA AU  UAAUGAAU UAGACAUA A
  || ||  |||||||||||| ||  |||||||| ||||||||
  GU AC  GUGUAAGUAUAU UA  AUUACUUA AUCUGUGU C
UU  A  AG            C  CA        G        G
Stem-loop sequence CACUGCUCAUAUUUAUAUAUAUACUAAUGAAUAUAGACAUAUACGUGUGUCUAGAUUCAUUAACAUCUAUAUGAAUGUGGACAAUGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK243435.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  ||=|||||||||||||||||||||
targets:1713   AAUAUUGUCCACAUUCAUAUAGAU   1736

0.0 Oryza sativa Japonica Group cDNA, clone: J100068A12, full insert sequence NA coding protein psRNATarget
XM_015755175.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  ||=|||||||||||||||||||||
targets:1723   AAUAUUGUCCACAUUCAUAUAGAU   1746

0.0 PREDICTED: Oryza sativa Japonica Group cytochrome P450 76M5-like (LOC4347207), mRNA cytochrome P450 76M5-like(LOC4347207) coding protein psRNATarget
AK073522.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=||||||||||||||||||||||
targets:2496   AGCAUUGUCCACAUUCAUAUAGAU   2519

0.0 Oryza sativa Japonica Group cDNA clone:J033046G09, full insert sequence NA coding protein psRNATarget
XM_015767218.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=||||||||||||||||||||||
targets:3707   AGCAUUGUCCACAUUCAUAUAGAU   3730

0.0 PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X7, mRNA putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106) coding protein psRNATarget
XM_015767215.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=||||||||||||||||||||||
targets:3803   AGCAUUGUCCACAUUCAUAUAGAU   3826

0.0 PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X4, mRNA putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106) coding protein psRNATarget
XM_015767217.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=||||||||||||||||||||||
targets:3862   AGCAUUGUCCACAUUCAUAUAGAU   3885

0.0 PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X6, mRNA putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106) coding protein psRNATarget
XM_015767212.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=||||||||||||||||||||||
targets:3929   AGCAUUGUCCACAUUCAUAUAGAU   3952

0.0 PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X2, mRNA putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106) coding protein psRNATarget
XM_015767214.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=||||||||||||||||||||||
targets:3958   AGCAUUGUCCACAUUCAUAUAGAU   3981

0.0 PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X3, mRNA putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106) coding protein psRNATarget
XM_015767211.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=||||||||||||||||||||||
targets:4025   AGCAUUGUCCACAUUCAUAUAGAU   4048

0.0 PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At5g43820 (LOC4329106), transcript variant X1, mRNA putative pentatricopeptide repeat-containing protein At5g43820(LOC4329106) coding protein psRNATarget
CT833624.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||||||=||||||||||||
targets:1049   AGCAUUGUCCAUAUUCAUAUAGAU   1072

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN046D04, full insert sequence NA coding protein psRNATarget
XM_015768357.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||||||||||=||||||||
targets:1554   AGCAUUGUCCACAUUUAUAUAGAU   1577

1.5 PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X6, mRNA protein SRG1(LOC4329022) coding protein psRNATarget
XM_015768354.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||||||||||=||||||||
targets:1590   AGCAUUGUCCACAUUUAUAUAGAU   1613

1.5 PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X3, mRNA protein SRG1(LOC4329022) coding protein psRNATarget
XM_015768355.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||||||||||=||||||||
targets:1604   AGCAUUGUCCACAUUUAUAUAGAU   1627

1.5 PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X4, mRNA protein SRG1(LOC4329022) coding protein psRNATarget
AK065581.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||||||||||=||||||||
targets:1610   AGCAUUGUCCACAUUUAUAUAGAU   1633

1.5 Oryza sativa Japonica Group cDNA clone:J013034J09, full insert sequence NA coding protein psRNATarget
XM_015768356.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||||||||||=||||||||
targets:1638   AGCAUUGUCCACAUUUAUAUAGAU   1661

1.5 PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X5, mRNA protein SRG1(LOC4329022) coding protein psRNATarget
XM_015768352.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||||||||||=||||||||
targets:1648   AGCAUUGUCCACAUUUAUAUAGAU   1671

1.5 PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X1, mRNA protein SRG1(LOC4329022) coding protein psRNATarget
XM_015768353.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||||||||||=||||||||
targets:1660   AGCAUUGUCCACAUUUAUAUAGAU   1683

1.5 PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X2, mRNA protein SRG1(LOC4329022) coding protein psRNATarget
XM_015791317.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||||||=||||||||||||
targets:4447   AGCAUUGUCCAUAUUCAUAUAGAU   4470

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342778 (LOC4342778), transcript variant X1, mRNA uncharacterized LOC4342778(Os07g0231700) coding protein psRNATarget
XM_015781390.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |==||||||||||||=||||||||
targets:754   AGUAUUGUCCACAUUUAUAUAGAU   777

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X2, mRNA uncharacterized LOC4336685(LOC4336685) coding protein psRNATarget
XM_015781389.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |==||||||||||||=||||||||
targets:754   AGUAUUGUCCACAUUUAUAUAGAU   777

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X1, mRNA uncharacterized LOC4336685(LOC4336685) coding protein psRNATarget
XM_015755177.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |*||||||||||||||||||||||
targets:1760   ACCAUUGUCCACAUUCAUAUAGAU   1783

0.0 PREDICTED: Oryza sativa Japonica Group glutathione S-transferase T3 (LOC4346703), transcript variant X1, mRNA glutathione S-transferase T3(LOC4346703) coding protein psRNATarget
JB164407.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||||||||||||||*||||
targets:19   AGCAUUGUCCACAUUCAUAGAGAU   42

1.5 Sequence 2071 from Patent EP2559767 NA coding protein psRNATarget
HI403946.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||||||||||||||*||||
targets:19   AGCAUUGUCCACAUUCAUAGAGAU   42

1.5 Sequence 2071 from Patent EP2074227 NA coding protein psRNATarget
LQ236076.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||||||||||||||*||||
targets:19   AGCAUUGUCCACAUUCAUAGAGAU   42

1.5 Sequence 2071 from Patent EP2985353 NA coding protein psRNATarget
XM_015790894.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||||||||||||||||*||
targets:562   AGCAUUGUCCACAUUCAUAUAUAU   585

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107276821 (LOC107276821), mRNA uncharacterized LOC107276821(LOC107276821) coding protein psRNATarget
XM_015755199.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||||||||||*||||||||
targets:1086   AGCAUUGUCCACAUUAAUAUAGAU   1109

1.5 PREDICTED: Oryza sativa Japonica Group cinnamoyl-CoA reductase 1 (LOC9270429), transcript variant X1, mRNA cinnamoyl-CoA reductase 1(LOC9270429) coding protein psRNATarget
XM_015755201.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||||||||||*||||||||
targets:1089   AGCAUUGUCCACAUUAAUAUAGAU   1112

1.5 PREDICTED: Oryza sativa Japonica Group cinnamoyl-CoA reductase 1 (LOC9270429), transcript variant X2, mRNA cinnamoyl-CoA reductase 1(LOC9270429) coding protein psRNATarget
AK100993.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |||||||*|||||||=||||||||
targets:1172   AACAUUGCCCACAUUUAUAUAGAU   1195

2.5 Oryza sativa Japonica Group cDNA clone:J023146F15, full insert sequence NA coding protein psRNATarget
XM_015764678.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||||||||||||||||*||
targets:1612   AGCAUUGUCCACAUUCAUAUACAU   1635

1.5 PREDICTED: Oryza sativa Japonica Group mannan endo-1,4-beta-mannosidase 8 (LOC9271116), mRNA mannan endo-1,4-beta-mannosidase 8(LOC9271116) coding protein psRNATarget
AK070622.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  ||=|*|||||||||||||||||||
targets:1944   AAUACUGUCCACAUUCAUAUAGAU   1967

0.0 Oryza sativa Japonica Group cDNA clone:J023059G14, full insert sequence NA coding protein psRNATarget
XM_015761840.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  ||=|*|||||||||||||||||||
targets:1984   AAUACUGUCCACAUUCAUAUAGAU   2007

0.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350579 (LOC4350579), mRNA uncharacterized LOC4350579(LOC4350579) coding protein psRNATarget
XM_015757225.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||*||||||||||||||||
targets:2296   AGCAUUGCCCACAUUCAUAUAGAU   2319

1.0 PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g08610 (LOC4348896), mRNA pentatricopeptide repeat-containing protein At1g08610(LOC4348896) coding protein psRNATarget
XM_015766247.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||*||||||||||||||||
targets:2504   AGCAUUGCCCACAUUCAUAUAGAU   2527

1.0 PREDICTED: Oryza sativa Japonica Group putative receptor protein kinase ZmPK1 (LOC107277300), mRNA putative receptor protein kinase ZmPK1(LOC107277300) coding protein psRNATarget
AK103437.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||*||||||||||||||||
targets:2368   AGCAUUGCCCACAUUCAUAUAGAU   2391

1.0 Oryza sativa Japonica Group cDNA clone:J033129C05, full insert sequence NA coding protein psRNATarget
AK288786.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |||||||*|||||||=||||||||
targets:3674   AACAUUGCCCACAUUUAUAUAGAU   3697

2.5 Oryza sativa Japonica Group cDNA, clone: J090069L01, full insert sequence NA coding protein psRNATarget
AK288932.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |||||||*|=||||||||||||||
targets:2981   AACAUUGCCUACAUUCAUAUAGAU   3004

2.0 Oryza sativa Japonica Group cDNA, clone: J090082H22, full insert sequence NA coding protein psRNATarget
AK288568.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=||||||||||||*|||||||||
targets:1391   AGCAUUGUCCACAUCCAUAUAGAU   1414

1.5 Oryza sativa Japonica Group cDNA, clone: J090048B06, full insert sequence NA coding protein psRNATarget
AK065957.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||*|=||||||||||||||
targets:588   AGCAUUGGCUACAUUCAUAUAGAU   611

2.0 Oryza sativa Japonica Group cDNA clone:J013044D08, full insert sequence NA coding protein psRNATarget
XM_015778351.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||*|=||||||||||||||
targets:646   AGCAUUGGCUACAUUCAUAUAGAU   669

2.0 PREDICTED: Oryza sativa Japonica Group UPF0426 protein At1g28150, chloroplastic (LOC4336466), transcript variant X3, mRNA UPF0426 protein At1g28150, chloroplastic(LOC4336466) coding protein psRNATarget
AK288796.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||*||=|||||||||||||
targets:772   AGCAUUGCCCGCAUUCAUAUAGAU   795

2.0 Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence NA coding protein psRNATarget
AK289029.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |==||||||||||||*||||||||
targets:1523   AGUAUUGUCCACAUUAAUAUAGAU   1546

1.5 Oryza sativa Japonica Group cDNA, clone: J090090O22, full insert sequence NA coding protein psRNATarget
XM_015766555.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||*==||||||||||||||
targets:2438   AGCAUUGCUUACAUUCAUAUAGAU   2461

3.0 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X9, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766554.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||*==||||||||||||||
targets:2528   AGCAUUGCUUACAUUCAUAUAGAU   2551

3.0 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X8, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766553.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||*==||||||||||||||
targets:2732   AGCAUUGCUUACAUUCAUAUAGAU   2755

3.0 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X7, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766552.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||*==||||||||||||||
targets:3922   AGCAUUGCUUACAUUCAUAUAGAU   3945

3.0 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X6, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766549.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||*==||||||||||||||
targets:4536   AGCAUUGCUUACAUUCAUAUAGAU   4559

3.0 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X3, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766548.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||*==||||||||||||||
targets:4698   AGCAUUGCUUACAUUCAUAUAGAU   4721

3.0 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X2, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766551.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||*==||||||||||||||
targets:4735   AGCAUUGCUUACAUUCAUAUAGAU   4758

3.0 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X5, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766550.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||*==||||||||||||||
targets:4820   AGCAUUGCUUACAUUCAUAUAGAU   4843

3.0 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X4, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
XM_015766546.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||*==||||||||||||||
targets:4902   AGCAUUGCUUACAUUCAUAUAGAU   4925

3.0 PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X1, mRNA probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614) coding protein psRNATarget
HI404563.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||*|||||||||||||*||
targets:12   AGCAUUGACCACAUUCAUAUAUAU   35

2.5 Sequence 2688 from Patent EP2074227 NA coding protein psRNATarget
JB165024.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||*|||||||||||||*||
targets:12   AGCAUUGACCACAUUCAUAUAUAU   35

2.5 Sequence 2688 from Patent EP2559767 NA coding protein psRNATarget
LQ236693.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||*|||||||||||||*||
targets:12   AGCAUUGACCACAUUCAUAUAUAU   35

2.5 Sequence 2688 from Patent EP2985353 NA coding protein psRNATarget
CT837804.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |*|||||*|=||||||||||||||
targets:879   AUCAUUGCCUACAUUCAUAUAGAU   902

2.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA115N24, full insert sequence NA coding protein psRNATarget
AK060129.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  ||=|||*||||||||||||||*||
targets:899   AAUAUUAUCCACAUUCAUAUAUAU   922

2.5 Oryza sativa Japonica Group cDNA clone:006-309-A10, full insert sequence NA coding protein psRNATarget
XM_015757964.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  ||=|||*||||||||||||||*||
targets:942   AAUAUUAUCCACAUUCAUAUAUAU   965

2.5 PREDICTED: Oryza sativa Japonica Group protein YLS9 (LOC4349292), transcript variant X1, mRNA protein YLS9(LOC4349292) coding protein psRNATarget
CT833662.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=||||*|||||||||||||*|||
targets:1041   AGCAUUUUCCACAUUCAUAUUGAU   1064

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN049L15, full insert sequence NA coding protein psRNATarget
AK066216.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=||||*|||||||||||||*|||
targets:1044   AGCAUUUUCCACAUUCAUAUUGAU   1067

2.5 Oryza sativa Japonica Group cDNA clone:J013052J02, full insert sequence NA coding protein psRNATarget
CT832810.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=||||*|||||||||||||*|||
targets:1041   AGCAUUUUCCACAUUCAUAUUGAU   1064

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA121K07, full insert sequence NA coding protein psRNATarget
XM_015795868.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||*||||||||||*|||||
targets:1170   AGCAUUGCCCACAUUCAUUUAGAU   1193

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277671 (LOC107277671), mRNA uncharacterized LOC107277671(LOC107277671) coding protein psRNATarget
AK060498.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=||||*|||||||||||||*|||
targets:1269   AGCAUUUUCCACAUUCAUAUUGAU   1292

2.5 Oryza sativa Japonica Group cDNA clone:001-017-D02, full insert sequence NA coding protein psRNATarget
XM_015765335.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||*|||||||||||||*||
targets:1205   AGCAUUGCCCACAUUCAUAUAUAU   1228

2.5 PREDICTED: Oryza sativa Japonica Group light-inducible protein CPRF2-like (LOC107276775), transcript variant X2, mRNA light-inducible protein CPRF2-like(LOC107276775) coding protein psRNATarget
CT837661.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||*|||||||||||||*||
targets:1205   AGCAUUGCCCACAUUCAUAUAUAU   1228

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN063K17, full insert sequence NA coding protein psRNATarget
XM_015764394.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=||||*|||||||||||||*|||
targets:1309   AGCAUUUUCCACAUUCAUAUUGAU   1332

2.5 PREDICTED: Oryza sativa Japonica Group vesicle-associated membrane protein 721 (LOC4352920), mRNA vesicle-associated membrane protein 721(LOC4352920) coding protein psRNATarget
XM_015777391.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=||||*|||||||||||||*|||
targets:1294   AGCAUUUUCCACAUUCAUAUUGAU   1317

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4333864 (LOC4333864), mRNA uncharacterized LOC4333864(LOC4333864) coding protein psRNATarget
AK102210.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=||||*|||||||||||||*|||
targets:1634   AGCAUUUUCCACAUUCAUAUUGAU   1657

2.5 Oryza sativa Japonica Group cDNA clone:J033087I04, full insert sequence NA coding protein psRNATarget
XM_015767363.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=||||*|||||||||||||*|||
targets:1730   AGCAUUUUCCACAUUCAUAUUGAU   1753

2.5 PREDICTED: Oryza sativa Japonica Group CAAX prenyl protease 1 homolog (LOC4330318), mRNA CAAX prenyl protease 1 homolog(LOC4330318) coding protein psRNATarget
XM_015778179.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=||||*|||||||||||||*|||
targets:1637   AGCAUUUUCCACAUUCAUAUUGAU   1660

2.5 PREDICTED: Oryza sativa Japonica Group methylthioribose kinase 2 (LOC107276080), mRNA methylthioribose kinase 2(LOC107276080) coding protein psRNATarget
XM_015765333.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||*|||||||||||||*||
targets:2104   AGCAUUGCCCACAUUCAUAUAUAU   2127

2.5 PREDICTED: Oryza sativa Japonica Group light-inducible protein CPRF2-like (LOC107276775), transcript variant X1, mRNA light-inducible protein CPRF2-like(LOC107276775) coding protein psRNATarget
AK119344.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||*||||||||||*|||||
targets:1173   AGCAUUGCCCACAUUCAUUUAGAU   1196

2.5 Oryza sativa Japonica Group cDNA clone:001-131-E01, full insert sequence NA coding protein psRNATarget
XM_015769168.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||*|||||||||||||*||
targets:2682   AGCAUUGCCCACAUUCAUAUAUAU   2705

2.5 PREDICTED: Oryza sativa Japonica Group probable splicing factor 3A subunit 1 (LOC4328860), transcript variant X3, mRNA probable splicing factor 3A subunit 1(LOC4328860) coding protein psRNATarget
AK121342.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=||||*|||||||||||||*|||
targets:4560   AGCAUUUUCCACAUUCAUAUUGAU   4583

2.5 Oryza sativa Japonica Group cDNA clone:J023121A11, full insert sequence NA coding protein psRNATarget
XM_015763234.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=|||||*|||||||||||||*||
targets:6292   AGCAUUGCCCACAUUCAUAUAUAU   6315

2.5 PREDICTED: Oryza sativa Japonica Group F-box protein At5g25290 (LOC4326973), transcript variant X1, mRNA F-box protein At5g25290(LOC4326973) coding protein psRNATarget
XM_015789040.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=||||*|||||||||||||*|||
targets:4726   AGCAUUUUCCACAUUCAUAUUGAU   4749

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266525 (LOC9266525), transcript variant X1, mRNA uncharacterized LOC9266525(LOC9266525) coding protein psRNATarget
CT835025.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |==|||*|||||||||||||*|||
targets:227   AGUAUUUUCCACAUUCAUAUUGAU   250

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI029L19, full insert sequence NA coding protein psRNATarget
AK101666.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |==||||*|||||||||||||*||
targets:1600   AGUAUUGCCCACAUUCAUAUAUAU   1623

2.5 Oryza sativa Japonica Group cDNA clone:J033057N11, full insert sequence NA coding protein psRNATarget
XM_015785143.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |==||*|*||=|||||||||||||
targets:1726   AGUAUCGCCCGCAUUCAUAUAGAU   1749

3.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266451 (LOC9266451), mRNA uncharacterized LOC9266451(LOC9266451) coding protein psRNATarget
AK070816.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |*|||||*|||||||||||||*||
targets:1281   AUCAUUGCCCACAUUCAUAUAUAU   1304

2.5 Oryza sativa Japonica Group cDNA clone:J023066M01, full insert sequence NA coding protein psRNATarget
AK069041.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |*=||||*|||||||||||||*||
targets:2182   AUUAUUGCCCACAUUCAUAUAUAU   2205

2.5 Oryza sativa Japonica Group cDNA clone:J023004J15, full insert sequence NA coding protein psRNATarget
AK106777.1
ncRNA:24   UUGUAACAGGUGUAAGUAUAUCUA   1
  |=||||***|||||||||||||||
targets:1298   AGCAUUACACACAUUCAUAUAGAU   1321

3.0 Oryza sativa Japonica Group cDNA clone:002-115-G12, full insert sequence NA coding protein psRNATarget
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