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BaseInfo

ncRNA ID	novel_osa_miR3252
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:8452825-8452911 [-]
Reference genome	IRGSP-1.0
Source	SRR2040387
Length	22
Mature sequence(if miRNA)	1 - UUUCCGUGUCGAACGUUUGACC - 22
Stem-loop(if miRNA)	--        A  UA  A        AAGUUCU   C  UC  UCC   UUAGAUGU UG  GC GAGGCCUA       ACU CA  UG   C   |||||||| ||  || ||||||||       ||| ||  ||   AGUUUGCA GC  UG CUUUGGGU       UGA GU  AC   A CC        A  UG  C        -----GU   C  UA  UUU
Stem-loop sequence	UUAGAUGUAUGUAGCAGAGGCCUAAAGUUCUACUCCAUCUGUCCCAUUUCAAUUGCAGUUGUGGGUUUCCGUGUCGAACGUUUGACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT827968.1	ncRNA:22   CCAGUUUGCAAGCUGUGCCUUU   1   |||||||||||*|||||||||| targets:469   GGUCAAACGUUGGACACGGAAA   490 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN031I05, full insert sequence	NA	coding protein	psRNATarget
XM_015787836.1	ncRNA:22   CCAGUUUGCAAGCUGUGCCUUU   1   |||||||||||*|||||||||| targets:1253   GGUCAAACGUUGGACACGGAAA   1274 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342071 (LOC4342071), mRNA	uncharacterized LOC4342071(LOC4342071)	coding protein	psRNATarget
XM_015787694.1	ncRNA:22   CCAGUUUGCAAGCUGUGCCUUU   1   |||||||||||*|||||||||| targets:1499   GGUCAAACGUUGGACACGGAAA   1520 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group acetylajmalan esterase (LOC4341925), mRNA	acetylajmalan esterase(LOC4341925)	coding protein	psRNATarget
AK071262.1	ncRNA:22   CCAGUUUGCAAGCUGUGCCUUU   1   |||||||||||*|||||||||| targets:1381   GGUCAAACGUUGGACACGGAAA   1402 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023085J06, full insert sequence	NA	coding protein	psRNATarget
XM_015759207.1	ncRNA:22   CCAGUUUGCAAGCUGUGCCUUU   1   |||||||||||*|||||||||| targets:60   GGUCAAACGUUGGACACGGAAA   81 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group piriformospora indica-insensitive protein 2 (LOC4323927), mRNA	piriformospora indica-insensitive protein 2(LOC4323927)	coding protein	psRNATarget
AK070409.1	ncRNA:22   CCAGUUUGCAAGCUGUGCCUUU   1   ||||||||||||*||||||||| targets:1231   GGUCAAACGUUCCACACGGAAA   1252 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023054N07, full insert sequence	NA	coding protein	psRNATarget
AK288660.1	ncRNA:22   CCAGUUUGCAAGCUGUGCCUUU   1   |||||||||||*|||||||||| targets:1510   GGUCAAACGUUAGACACGGAAA   1531 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090057N05, full insert sequence	NA	coding protein	psRNATarget
XM_015792473.1	ncRNA:22   CCAGUUUGCAAGCUGUGCCUUU   1   ||||||||*||=|||||||||| targets:2712   GGUCAAACAUUUGACACGGAAA   2733 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group hydrophobic protein LTI6A (LOC4344028), transcript variant X2, mRNA	hydrophobic protein LTI6A(LOC4344028)	coding protein	psRNATarget
XM_015792475.1	ncRNA:22   CCAGUUUGCAAGCUGUGCCUUU   1   ||||||||*||=|||||||||| targets:2726   GGUCAAACAUUUGACACGGAAA   2747 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group hydrophobic protein LTI6A (LOC4344028), transcript variant X4, mRNA	hydrophobic protein LTI6A(LOC4344028)	coding protein	psRNATarget
XM_015783613.1	ncRNA:21   CAGUUUGCAAGCUGUGCCUUU   1   ||||||=|||*|||||||||| targets:1   GUCAAAUGUUAGACACGGAAA   21 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339531 (LOC4339531), mRNA	uncharacterized LOC4339531(LOC4339531)	coding protein	psRNATarget
AK068180.1	ncRNA:22   CCAGUUUGCAAGCUGUGCCUUU   1   *|*||||||||*|||||||||| targets:460   AGACAAACGUUGGACACGGAAA   481 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013135E14, full insert sequence	NA	coding protein	psRNATarget