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BaseInfo

ncRNA ID novel_osa_miR3250
Species Oryza sativa
Class miRNA
Genome position Chr12:22809998-22810080 [+]
Reference genome IRGSP-1.0
Source SRR2040387
Length 24
Mature sequence(if miRNA) 1 - CUUCGCAUGUGGUCUUCUUAGGUC - 24
Stem-loop(if miRNA) --               UCU    UC A       G   AAU
  CUUCGCAUGUGGUCU   UAGG  G CCGCAUG GAA   A
  |||||||||||||||   ||||  | ||||||| |||
  GAAGCGUACGCCAGG   AUUC  C GGUGUAC CUU   U
UA               UAU    UU -       G   CUA
Stem-loop sequence CUUCGCAUGUGGUCUUCUUAGGUCGACCGCAUGGGAAAAUAUAUCUUCGCAUGUGGCUUCUUAUAUGGACCGCAUGCGAAGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288261.1
ncRNA:24   CUGGAUUCUUCUGGUGUACGCUUC   1
  ||||||||||||||=|||||||||
targets:3221   GACCUAAGAAGACCGCAUGCGAAG   3244

1.5 Oryza sativa Japonica Group cDNA, clone: J090015P07, full insert sequence NA coding protein psRNATarget