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BaseInfo

ncRNA ID novel_osa_miR3249
Species Oryza sativa
Class miRNA
Genome position Chr1:37485011-37485094 [-]
Reference genome IRGSP-1.0
Source SRR1555747;SRR4407961;SRR1556020
Length 24
Mature sequence(if miRNA) 1 - AGAAUGAUUUAUAUUGUGAAACGG - 24
Stem-loop(if miRNA) --                           A  --CC     CC
  GUUUCACAAUGUAAGUUAUUCUAGUAU UC    ACAUU  U
  ||||||||||||||||||||||||||| ||    |||||
  CAAAGUGUUAUAUUUAGUAAGAUCGUA AG    UGUAG  A
GG                           A  UAAU     UU
Stem-loop sequence GUUUCACAAUGUAAGUUAUUCUAGUAUAUCCCACAUUCCUAUUGAUGUUAAUGAAAUGCUAGAAUGAUUUAUAUUGUGAAACGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015774602.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  ||||||||||||||||||||||||
targets:993   CCGUUUCACAAUAUAAAUCAUUCU   1016

0.0 PREDICTED: Oryza sativa Japonica Group protein app1 (LOC4334321), mRNA protein app1(LOC4334321) coding protein psRNATarget
CT832752.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  ||||||||||||||||||||||||
targets:930   CCGUUUCACAAUAUAAAUCAUUCU   953

0.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN011H19, full insert sequence NA coding protein psRNATarget
AK069119.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  ||||||||||||||||||||||||
targets:962   CCGUUUCACAAUAUAAAUCAUUCU   985

0.0 Oryza sativa Japonica Group cDNA clone:J023003A19, full insert sequence NA coding protein psRNATarget
CT834553.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  ||||||||||||||||||||||||
targets:866   CCGUUUCACAAUAUAAAUCAUUCU   889

0.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA018G24, full insert sequence NA coding protein psRNATarget
XM_015789221.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  ||||||||||||||||=|||||||
targets:4841   CCGUUUCACAAUAUAAGUCAUUCU   4864

1.5 PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4343406), mRNA disease resistance protein RGA2(LOC4343406) coding protein psRNATarget
AK067512.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  ||||||||||||=|||||||||||
targets:2251   CCGUUUCACAAUGUAAAUCAUUCU   2274

1.5 Oryza sativa Japonica Group cDNA clone:J013109G08, full insert sequence NA coding protein psRNATarget
AK070890.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  ||||||||||||||||=|||||||
targets:893   CCGUUUCACAAUAUAAGUCAUUCU   916

1.5 Oryza sativa Japonica Group cDNA clone:J023069D18, full insert sequence NA coding protein psRNATarget
XM_015756761.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  ||||||||||||||||=|||||||
targets:3336   CCGUUUCACAAUAUAAGUCAUUCU   3359

1.5 PREDICTED: Oryza sativa Japonica Group G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 (LOC4347249), mRNA G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370(LOC4347249) coding protein psRNATarget
XM_015760082.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  ||||||||||||||||=|||||||
targets:1480   CCGUUUCACAAUAUAAGUCAUUCU   1503

1.5 PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4350193), mRNA putative protease Do-like 14(LOC4350193) coding protein psRNATarget
AK106593.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  ||||||||||||||||=|||||||
targets:1845   CCGUUUCACAAUAUAAGUCAUUCU   1868

1.5 Oryza sativa Japonica Group cDNA clone:002-111-H05, full insert sequence NA coding protein psRNATarget
AK099623.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  ||||||||||||||||=|||||||
targets:70   CCGUUUCACAAUAUAAGUCAUUCU   93

1.5 Oryza sativa Japonica Group cDNA clone:J013053G12, full insert sequence NA coding protein psRNATarget
XM_015764968.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  ||||||||||||||||=|||||||
targets:1130   CCGUUUCACAAUAUAAGUCAUUCU   1153

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269766 (LOC9269766), mRNA uncharacterized LOC9269766(LOC9269766) coding protein psRNATarget
XM_015795143.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  ||||||||||||||||=|||||||
targets:1267   CCGUUUCACAAUAUAAGUCAUUCU   1290

1.5 PREDICTED: Oryza sativa Japonica Group tetraketide alpha-pyrone reductase 1 (LOC4346033), mRNA tetraketide alpha-pyrone reductase 1(LOC4346033) coding protein psRNATarget
CT831352.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  ||||||||||||||||=|||||||
targets:1228   CCGUUUCACAAUAUAAGUCAUUCU   1251

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA114A09, full insert sequence NA coding protein psRNATarget
CT837839.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  ||||||||||||=|||||||||||
targets:940   CCGUUUCACAAUGUAAAUCAUUCU   963

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105C15, full insert sequence NA coding protein psRNATarget
XM_015767720.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  ||||||||||||||||=|||||||
targets:550   CCGUUUCACAAUAUAAGUCAUUCU   573

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4330679 (LOC4330679), mRNA uncharacterized LOC4330679(LOC4330679) coding protein psRNATarget
XM_015786713.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  ||||||||||||=|||||||||||
targets:628   CCGUUUCACAAUGUAAAUCAUUCU   651

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339970 (LOC4339970), mRNA uncharacterized LOC4339970(LOC4339970) coding protein psRNATarget
AK107938.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  ||||||||||||||||=|||||||
targets:520   CCGUUUCACAAUAUAAGUCAUUCU   543

1.5 Oryza sativa Japonica Group cDNA clone:002-135-A10, full insert sequence NA coding protein psRNATarget
AK288502.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  =|||||||||||||||=|||||||
targets:549   UCGUUUCACAAUAUAAGUCAUUCU   572

1.5 Oryza sativa Japonica Group cDNA, clone: J090041D12, full insert sequence NA coding protein psRNATarget
XM_015793334.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  |=||||||=|||||||=|||||||
targets:1718   CUGUUUCAUAAUAUAAGUCAUUCU   1741

2.5 PREDICTED: Oryza sativa Japonica Group transcription factor bHLH112 (LOC9271688), transcript variant X1, mRNA transcription factor bHLH112(LOC9271688) coding protein psRNATarget
XM_015793335.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  |=||||||=|||||||=|||||||
targets:1700   CUGUUUCAUAAUAUAAGUCAUUCU   1723

2.5 PREDICTED: Oryza sativa Japonica Group transcription factor bHLH112 (LOC9271688), transcript variant X2, mRNA transcription factor bHLH112(LOC9271688) coding protein psRNATarget
XM_015793336.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  |=||||||=|||||||=|||||||
targets:1547   CUGUUUCAUAAUAUAAGUCAUUCU   1570

2.5 PREDICTED: Oryza sativa Japonica Group transcription factor bHLH112 (LOC9271688), transcript variant X3, mRNA transcription factor bHLH112(LOC9271688) coding protein psRNATarget
XM_015773673.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  ==||||||||||||||=|||||||
targets:1752   UUGUUUCACAAUAUAAGUCAUUCU   1775

1.5 PREDICTED: Oryza sativa Japonica Group cytochrome P450 78A5 (LOC4333404), mRNA cytochrome P450 78A5(LOC4333404) coding protein psRNATarget
XM_015787094.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  ||||||||||||||||||||||*|
targets:1655   CCGUUUCACAAUAUAAAUCAUUAU   1678

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4341267 (LOC4341267), transcript variant X1, mRNA uncharacterized LOC4341267(LOC4341267) coding protein psRNATarget
AK065833.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  ||||||||||||||||||||||*|
targets:915   CCGUUUCACAAUAUAAAUCAUUAU   938

1.5 Oryza sativa Japonica Group cDNA clone:J013040K01, full insert sequence NA coding protein psRNATarget
AK102104.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  ||*|||||||||||||=|||||||
targets:626   CCAUUUCACAAUAUAAGUCAUUCU   649

1.5 Oryza sativa Japonica Group cDNA clone:J033084B10, full insert sequence NA coding protein psRNATarget
AK067404.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  ||*|||||||||||||=|||||||
targets:624   CCAUUUCACAAUAUAAGUCAUUCU   647

1.5 Oryza sativa Japonica Group cDNA clone:J013106F19, full insert sequence NA coding protein psRNATarget
XM_015778842.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  ||*|||||||||||||=|||||||
targets:1106   CCAUUUCACAAUAUAAGUCAUUCU   1129

1.5 PREDICTED: Oryza sativa Japonica Group putative RING-H2 finger protein ATL50 (LOC4336763), mRNA putative RING-H2 finger protein ATL50(LOC4336763) coding protein psRNATarget
AK067005.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  ||*|||||||||||||=|||||||
targets:1062   CCAUUUCACAAUAUAAGUCAUUCU   1085

1.5 Oryza sativa Japonica Group cDNA clone:J013092H10, full insert sequence NA coding protein psRNATarget
XM_015794898.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  ||*|||||||||||||=|||||||
targets:511   CCAUUUCACAAUAUAAGUCAUUCU   534

1.5 PREDICTED: Oryza sativa Japonica Group putative EG45-like domain containing protein 1 (LOC9267730), mRNA putative EG45-like domain containing protein 1(LOC9267730) coding protein psRNATarget
AK242586.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  ||*|||||||||||||=|||||||
targets:500   CCAUUUCACAAUAUAAGUCAUUCU   523

1.5 Oryza sativa Japonica Group cDNA, clone: J090010P05, full insert sequence NA coding protein psRNATarget
XM_015774190.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  |=|||||||=||||||||||||*|
targets:1378   CUGUUUCACGAUAUAAAUCAUUAU   1401

2.5 PREDICTED: Oryza sativa Japonica Group IAA-amino acid hydrolase ILR1-like 4 (LOC4334708), mRNA IAA-amino acid hydrolase ILR1-like 4(LOC4334708) coding protein psRNATarget
CT833422.1
ncRNA:24   GGCAAAGUGUUAUAUUUAGUAAGA   1
  |=|||||||=||||||||||||*|
targets:124   CUGUUUCACGAUAUAAAUCAUUAU   147

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA030N21, full insert sequence NA coding protein psRNATarget
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