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BaseInfo

ncRNA ID	novel_osa_miR3248
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:17771357-17771537 [+]
Reference genome	IRGSP-1.0
Source	SRR2040387;SRR2040394;SRR2040400;SRR2040401;SRR2040406;SRR2040407;SRR2040408;SRR2040409;SRR3123650;SRR1609317;SRR1612403;SRR1738239
Length	24
Mature sequence(if miRNA)	158 - AAACGUUGCAAGUAAAAACUUAAA - 181
Stem-loop(if miRNA)	--                                          -AU      -    UAUUAUUUAUUUUAU     A    CUA    AU   UAAGUUUUUGCUUGCAACGUUUGACCACUCGUCUUAUUCAAA   UUUUUG AAAU               UUGUG CUUA   UAUU  C   ||||||||||||||||||||||||||||||||||||||||||   |||||| ||||               ||||| ||||   ||||   AUUCAAAAAUGAACGUUGCAAACUGGUGAGCAGAAUAAGUUU   AAAAAC UUUA               AAUAC GAAU   AUGA  U AA                                          AAU      G    UAUUUUUUGCUUUUC     -    UUC    CA
Stem-loop sequence	UAAGUUUUUGCUUGCAACGUUUGACCACUCGUCUUAUUCAAAAUUUUUUGAAAUUAUUAUUUAUUUUAUUUGUGACUUACUAUAUUAUCUACAGUACUUUAAGCAUAACUUUUCGUUUUUUAUAUUUGCAAAAAUAAUUUGAAUAAGACGAGUGGUCAAACGUUGCAAGUAAAAACUUAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK289013.1	ncRNA:24   AAAUUCAAAAAUGAACGUUGCAAA   1   |||=|||||||||||||||||||| targets:3847   UUUGAGUUUUUACUUGCAACGUUU   3870 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090089J03, full insert sequence	NA	coding protein	psRNATarget
AK288920.1	ncRNA:24   AAAUUCAAAAAUGAACGUUGCAAA   1   |||=|||||||||||||||||||| targets:3902   UUUGAGUUUUUACUUGCAACGUUU   3925 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence	NA	coding protein	psRNATarget
CT834713.1	ncRNA:24   AAAUUCAAAAAUGAACGUUGCAAA   1   |||||||||||=|||||||||||| targets:487   UUUAAGUUUUUGCUUGCAACGUUU   510 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA008G23, full insert sequence	NA	coding protein	psRNATarget
AK111038.1	ncRNA:24   AAAUUCAAAAAUGAACGUUGCAAA   1   |||=|||||||=|||||||||||| targets:485   UUUGAGUUUUUGCUUGCAACGUUU   508 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-175-A10, full insert sequence	NA	coding protein	psRNATarget
XM_015756113.1	ncRNA:24   AAAUUCAAAAAUGAACGUUGCAAA   1   |||=||||||||||||||||*||| targets:1648   UUUGAGUUUUUACUUGCAACAUUU   1671 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable receptor-like protein kinase At5g47070 (LOC4347684), mRNA	probable receptor-like protein kinase At5g47070(LOC4347684)	coding protein	psRNATarget
AK288330.1	ncRNA:24   AAAUUCAAAAAUGAACGUUGCAAA   1   |||=|*||||||=||||||||||| targets:1095   UUUGACUUUUUAUUUGCAACGUUU   1118 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090022I21, full insert sequence	NA	coding protein	psRNATarget
XM_015758393.1	ncRNA:24   AAAUUCAAAAAUGAACGUUGCAAA   1   |||=|*||||||=||||||||||| targets:1676   UUUGACUUUUUAUUUGCAACGUUU   1699 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4348660 (LOC4348660), mRNA	uncharacterized LOC4348660(LOC4348660)	coding protein	psRNATarget
AK109674.1	ncRNA:24   AAAUUCAAAAAUGAACGUUGCAAA   1   |||=|*||||||=||||||||||| targets:1546   UUUGACUUUUUAUUUGCAACGUUU   1569 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-145-B06, full insert sequence	NA	coding protein	psRNATarget