Search result

BaseInfo

ncRNA ID	novel_osa_miR3247
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:7281512-7281616 [+]
Reference genome	IRGSP-1.0
Source	SRR2040387
Length	24
Mature sequence(if miRNA)	82 - ACCGGGACUAAAGAUCUUAACUUA - 105
Stem-loop(if miRNA)	--                                                 A   AGUUAAGAUCUUUAGUCCCGGUUGGUAACACCAACCGGGGCUAAAGAUC C   ||||||||||||||||||||||||||||||||||||||||||||||||| C   UCAAUUCUAGAAAUCAGGGCCAACCAUUGUGGUUGGCCCCGAUUUCUAG G AU                                                 G
Stem-loop sequence	AGUUAAGAUCUUUAGUCCCGGUUGGUAACACCAACCGGGGCUAAAGAUCACCGGGAUCUUUAGCCCCGGUUGGUGUUACCAACCGGGACUAAAGAUCUUAACUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288598.1	ncRNA:24   AUUCAAUUCUAGAAAUCAGGGCCA   1   |||||||*|||||||||||||||| targets:962   UAAGUUACGAUCUUUAGUCCCGGU   985 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090051P05, full insert sequence	NA	coding protein	psRNATarget
AK288796.1	ncRNA:24   AUUCAAUUCUAGAAAUCAGGGCCA   1   *|||*||=|||||||||||||||* targets:1783   AAAGAUAGGAUCUUUAGUCCCGGG   1806 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
XM_015755226.1	ncRNA:24   AUUCAAUUC-UAGAAAUCAGGGCCA   1   *|||*|=||-||||||||||||||| targets:61   AAAGAUGAGGAUCUUUAGUCCCGGU   85 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278786 (LOC107278786), mRNA	uncharacterized LOC107278786(LOC107278786)	coding protein	psRNATarget
AK288377.1	ncRNA:24   AUUCAAUU-CUAGAAAUCAGGGCCA   1   *|||*||=-|||||||||||||||| targets:1367   AAAGAUAGCGAUCUUUAGUCCCGGU   1391 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090026K06, full insert sequence	NA	coding protein	psRNATarget
XM_015755256.1	ncRNA:24   AUUCAAUU-CUAGAAAUCAGGGCCA   1   |||--|||-|||||||||||||||| targets:136   UAA--UAAUGAUCUUUAGUCCCGGU   158 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346665 (LOC4346665), transcript variant X2, mRNA	uncharacterized LOC4346665(LOC4346665)	coding protein	psRNATarget
AK121178.1	ncRNA:24   AU--UCAAUUCUAGAAAUCAGGGCCA   1   ||--|||*|*|||||||||||||||| targets:1898   UAGUAGUGACGAUCUUUAGUCCCGGU   1923 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023083G22, full insert sequence	NA	coding protein	psRNATarget
AK288438.1	ncRNA:24   AUUCAAUUCUAGAAAUCAGGGCCA   1   **=|||==*||||||||||||||| targets:1414   CCGGUUGGUAUCUUUAGUCCCGGU   1437 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:24   AUUCAAUUCUAGAAAUCAGGGCCA   1   *==***|=|||||||||||||||| targets:547   GGGCCGAGGAUCUUUAGUCCCGGU   570 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:24   AUUCAAUU-CUAGAAAUCAGGGCCA   1   ******||-|||||||||||||||| targets:416   ACUACAAAUGAUCUUUAGUCCCGGU   440 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
AK288191.1	ncRNA:24   AUU-C-----AAUUCUAGAAAUCAGGGCCA   1   |||-|-----||**|||||||||||||||| targets:1548   UAAUGGAACUUUUUGAUCUUUAGUCCCGGU   1577 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090007A11, full insert sequence	NA	coding protein	psRNATarget
AK288224.1	ncRNA:24   AUUCAAUUCUAGAAAUCAGGGCCA   1   *****|*=|||||||||||||||| targets:1252   CCCCCUCGGAUCUUUAGUCCCGGU   1275 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090012B15, full insert sequence	NA	coding protein	psRNATarget