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BaseInfo

ncRNA ID novel_osa_miR3243
Species Oryza sativa
Class miRNA
Genome position Chr1:14217373-14217549 [+]
Reference genome IRGSP-1.0
Source SRR2040386;SRR2040389
Length 24
Mature sequence(if miRNA) 1 - AGUUUUUACUUGUAACGUUUGACC - 24
Stem-loop(if miRNA) --       AC                              A         -AAC   -UUUUUAUUUUAU     A    CUUUAUUAU
  AGUUUUU  UUGUAACGUUUGACCACUCGUCUUAUUCAA UUUUUUUUA    UAU             UUGUG CUUA         C
  |||||||  |||||||||||||||||||||||||||||| |||||||||    |||             ||||| ||||
  UCAAAAA  AACGUUGCAAACUGGUGAGCAGAAUAAGUU AAAAAAAAU    AUA             AACAC GAAU         U
AC       GU                              A         GUUU   UUUUUUGCUUUUC     -    UUCAAGACA
Stem-loop sequence AGUUUUUACUUGUAACGUUUGACCACUCGUCUUAUUCAAAUUUUUUUUAAACUAUUUUUUAUUUUAUUUGUGACUUACUUUAUUAUCUACAGAACUUUAAGCACAACUUUUCGUUUUUUAUAUUUGUAAAAAAAAAUUGAAUAAGACGAGUGGUCAAACGUUGCAAUGAAAAACUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288319.1
ncRNA:24   CCAGUUUGCAAUGUUCAUUUUUGA   1
  |||||||||||=||||||||||||
targets:1854   GGUCAAACGUUGCAAGUAAAAACU   1877

1.5 Oryza sativa Japonica Group cDNA, clone: J090021O08, full insert sequence NA coding protein psRNATarget
AK289013.1
ncRNA:24   CCAGUUUGCAAUGUUCAUUUUUGA   1
  *||=||||*|||||||||||||||
targets:4002   AGUUAAACAUUACAAGUAAAAACU   4025

1.0 Oryza sativa Japonica Group cDNA, clone: J090089J03, full insert sequence NA coding protein psRNATarget