ncRNA ID | novel_osa_miR3243 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr1:14217373-14217549 [+] |
Reference genome | IRGSP-1.0 |
Source | SRR2040386;SRR2040389 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AGUUUUUACUUGUAACGUUUGACC - 24 |
Stem-loop(if miRNA) |
--       AC                              A         -AAC   -UUUUUAUUUUAU     A    CUUUAUUAU   AGUUUUU  UUGUAACGUUUGACCACUCGUCUUAUUCAA UUUUUUUUA    UAU             UUGUG CUUA         C   |||||||  |||||||||||||||||||||||||||||| |||||||||    |||             ||||| ||||   UCAAAAA  AACGUUGCAAACUGGUGAGCAGAAUAAGUU AAAAAAAAU    AUA             AACAC GAAU         U AC       GU                              A         GUUU   UUUUUUGCUUUUC     -    UUCAAGACA |
Stem-loop sequence | AGUUUUUACUUGUAACGUUUGACCACUCGUCUUAUUCAAAUUUUUUUUAAACUAUUUUUUAUUUUAUUUGUGACUUACUUUAUUAUCUACAGAACUUUAAGCACAACUUUUCGUUUUUUAUAUUUGUAAAAAAAAAUUGAAUAAGACGAGUGGUCAAACGUUGCAAUGAAAAACUCA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AK288319.1 |
|
1.5 | Oryza sativa Japonica Group cDNA, clone: J090021O08, full insert sequence | NA | coding protein | psRNATarget | |||||||||
AK289013.1 |
|
1.0 | Oryza sativa Japonica Group cDNA, clone: J090089J03, full insert sequence | NA | coding protein | psRNATarget |