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BaseInfo

ncRNA ID	novel_osa_miR3241
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:5543298-5543410 [-]
Reference genome	IRGSP-1.0
Source	SRR2040386;SRR2040392;SRR2040395;SRR2040408;SRR2040410
Length	25
Mature sequence(if miRNA)	1 - AUGGGAAAUGUUAGAAUGACUUACA - 25
Stem-loop(if miRNA)	--                          C              GAAUCUAGACA       A   UAAGUCAUUCUAGCAUUUCUCAUAUU AUAUUAAUGUUAAU           UAUAUAU U   |||||||||||||||||||||||||| ||||||||||||||           |||||||   AUUCAGUAAGAUUGUAAAGGGUAUAA UAUAAUUAUAAUUA           AUAUAUA A AC                          A              -----------       U
Stem-loop sequence	UAAGUCAUUCUAGCAUUUCUCAUAUUCAUAUUAAUGUUAAUGAAUCUAGACAUAUAUAUAUAUAUAUAUAAUUAAUAUUAAUAUAAAUAUGGGAAAUGUUAGAAUGACUUACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015790274.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   ||||||||||||||||||||||||* targets:1959   UGUAAGUCAUUCUAACAUUUCCCAC   1983 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group alpha-humulene synthase (LOC9270657), transcript variant X1, mRNA	alpha-humulene synthase(LOC9270657)	coding protein	psRNATarget
XM_015790275.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   ||||||||||||||||||||||||* targets:1710   UGUAAGUCAUUCUAACAUUUCCCAC   1734 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group alpha-humulene synthase (LOC9270657), transcript variant X2, mRNA	alpha-humulene synthase(LOC9270657)	coding protein	psRNATarget
XM_015783728.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   ||||||||||||||=|||||||||* targets:2796   UGUAAGUCAUUCUAGCAUUUCCCAC   2820 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9271594 (LOC9271594), transcript variant X1, mRNA	uncharacterized LOC9271594(LOC9271594)	coding protein	psRNATarget
XM_015781780.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   ||||||||||||||=|||||||||* targets:3141   UGUAAGUCAUUCUAGCAUUUCCCAC   3165 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein ASPARTIC PROTEASE IN GUARD CELL 2 (LOC4337402), mRNA	protein ASPARTIC PROTEASE IN GUARD CELL 2(LOC4337402)	coding protein	psRNATarget
AK102955.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   ||||||||||||||=|||||||||* targets:765   UGUAAGUCAUUCUAGCAUUUCCCAC   789 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033115G04, full insert sequence	NA	coding protein	psRNATarget
XM_015779937.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   ||||||||||||||=|||||||||* targets:976   UGUAAGUCAUUCUAGCAUUUCCCAC   1000 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group small nuclear ribonucleoprotein Sm D1 (LOC4336118), transcript variant X1, mRNA	small nuclear ribonucleoprotein Sm D1(LOC4336118)	coding protein	psRNATarget
AK120060.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   ||||||||||||||=|||||||||* targets:2068   UGUAAGUCAUUCUAGCAUUUCCCAG   2092 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013001G01, full insert sequence	NA	coding protein	psRNATarget
XM_015793141.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   ||||||||||||||=|||||||||* targets:1916   UGUAAGUCAUUCUAGCAUUUCCCAG   1940 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4344622 (LOC4344622), mRNA	uncharacterized LOC4344622(LOC4344622)	coding protein	psRNATarget
XM_015779938.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   ||||||||||||||=|||||||||* targets:884   UGUAAGUCAUUCUAGCAUUUCCCAC   908 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group small nuclear ribonucleoprotein Sm D1 (LOC4336118), transcript variant X2, mRNA	small nuclear ribonucleoprotein Sm D1(LOC4336118)	coding protein	psRNATarget
AK099655.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   ||||||||||||||=|||||||||* targets:691   UGUAAGUCAUUCUAGCAUUUCCCAC   715 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013066C07, full insert sequence	NA	coding protein	psRNATarget
AK106586.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   ||||||||||||||=|||||||||* targets:610   UGUAAGUCAUUCUAGCAUUUCCCAC   634 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-111-E12, full insert sequence	NA	coding protein	psRNATarget
CT831709.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   ||||||||||||||=|||||||||* targets:1138   UGUAAGUCAUUCUAGCAUUUCCCAC   1162 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128P05, full insert sequence	NA	coding protein	psRNATarget
XM_015783671.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   ||||||||||||||=|||||||||* targets:980   UGUAAGUCAUUCUAGCAUUUCCCAC   1004 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339170 (LOC4339170), mRNA	uncharacterized LOC4339170(LOC4339170)	coding protein	psRNATarget
XM_015788299.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   ||||||||||||||=|||||||||* targets:625   UGUAAGUCAUUCUAGCAUUUCCCAC   649 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group GPI-anchored protein LORELEI (LOC4340837), transcript variant X1, mRNA	GPI-anchored protein LORELEI(LOC4340837)	coding protein	psRNATarget
XM_015788302.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   ||||||||||||||=|||||||||* targets:603   UGUAAGUCAUUCUAGCAUUUCCCAC   627 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group GPI-anchored protein LORELEI (LOC4340837), transcript variant X3, mRNA	GPI-anchored protein LORELEI(LOC4340837)	coding protein	psRNATarget
XM_015788300.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   ||||||||||||||=|||||||||* targets:594   UGUAAGUCAUUCUAGCAUUUCCCAC   618 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group GPI-anchored protein LORELEI (LOC4340837), transcript variant X2, mRNA	GPI-anchored protein LORELEI(LOC4340837)	coding protein	psRNATarget
AK100772.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   ||||||||||||||=|||||||||* targets:596   UGUAAGUCAUUCUAGCAUUUCCCAC   620 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023120A05, full insert sequence	NA	coding protein	psRNATarget
AK070550.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   ||*|||||||||||=|||||||||| targets:2612   UGCAAGUCAUUCUAGCAUUUCCCAU   2636 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023061C04, full insert sequence	NA	coding protein	psRNATarget
AK099623.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   |*||||||||||||=|||||||||| targets:81   UAUAAGUCAUUCUAGCAUUUCCCAU   105 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013053G12, full insert sequence	NA	coding protein	psRNATarget
XM_015780916.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   ||*|||||||||||=|||||||||* targets:4734   UGCAAGUCAUUCUAGCAUUUCCCAC   4758 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X1, mRNA	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691)	coding protein	psRNATarget
XM_015780918.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   ||*|||||||||||=|||||||||* targets:4725   UGCAAGUCAUUCUAGCAUUUCCCAC   4749 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X3, mRNA	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691)	coding protein	psRNATarget
XM_015780917.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   ||*|||||||||||=|||||||||* targets:4676   UGCAAGUCAUUCUAGCAUUUCCCAC   4700 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X2, mRNA	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691)	coding protein	psRNATarget
XM_015789221.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   |*||||||||||||=|||||||||* targets:4852   UAUAAGUCAUUCUAGCAUUUCCCAC   4876 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4343406), mRNA	disease resistance protein RGA2(LOC4343406)	coding protein	psRNATarget
AK067512.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   |||||*|||||||||||||||=||* targets:2262   UGUAAAUCAUUCUAACAUUUCUCAC   2286 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013109G08, full insert sequence	NA	coding protein	psRNATarget
AK070890.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   |*||||||||||||||||||=|||* targets:904   UAUAAGUCAUUCUAACAUUUUCCAC   928 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023069D18, full insert sequence	NA	coding protein	psRNATarget
XM_015760919.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   |*||||||||||||=|||||||||* targets:12   UUUAAGUCAUUCUAGCAUUUCCCAC   36 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350122 (LOC4350122), mRNA	uncharacterized LOC4350122(LOC4350122)	coding protein	psRNATarget
XM_015760082.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   |*||||||||||||=|||||||||* targets:1491   UAUAAGUCAUUCUAGCAUUUCCCAC   1515 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4350193), mRNA	putative protease Do-like 14(LOC4350193)	coding protein	psRNATarget
XM_015782137.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   |*||||||||||||=|||||||||* targets:1510   UUUAAGUCAUUCUAGCAUUUCCCAC   1534 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339294 (LOC4339294), mRNA	uncharacterized LOC4339294(LOC4339294)	coding protein	psRNATarget
AK287994.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   |*||||||||||||=|||||||||* targets:1461   UUUAAGUCAUUCUAGCAUUUCCCAC   1485 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J075099E21, full insert sequence	NA	coding protein	psRNATarget
CT837490.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   ||*|||||||||||=|||||||||* targets:833   UGCAAGUCAUUCUAGCAUUUCCCAC   857 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109F07, full insert sequence	NA	coding protein	psRNATarget
CT837839.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   |||||*||||||||=|||||||||* targets:951   UGUAAAUCAUUCUAGCAUUUCCCAC   975 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105C15, full insert sequence	NA	coding protein	psRNATarget
AK288229.1	ncRNA:25   ACAUUCAGUAAGAUUGUAAAGGGUA   1   **||||||||||||=|||||||||* targets:3661   CAUAAGUCAUUCUAGCAUUUCCCAC   3685 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090012M05, full insert sequence	NA	coding protein	psRNATarget