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BaseInfo

ncRNA ID	novel_osa_miR3238
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:26129522-26129602 [+]
Reference genome	IRGSP-1.0
Source	SRR1298758;SRR2099745;SRR1298766;SRR1300837
Length	24
Mature sequence(if miRNA)	1 - CACCAACCGGGACUAAAGAUGGAG - 24
Stem-loop(if miRNA)	--      --      C          -   CCGAUU     A   CACCAA  CCGGGA UAAAGAUGGA GUC      AUUUU A   ||||||  |||||| |||||||||| |||      |||||   GUGGUU  GGCCUU AUUUCUACCU UAG      UAAGA U CU      UA      U          A   --AAAU     C
Stem-loop sequence	CACCAACCGGGACUAAAGAUGGAGUCCCGAUUAUUUUAAUCAGAAUUAAAGAUAUCCAUCUUUAUUUCCGGAUUUGGUGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288796.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   *||*|||||||||||||||||||| targets:1827   AUCGAUCUUUAGUCCCGGUUGGUG   1850 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
LQ236051.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   =|==||||||||||||||||||** targets:46   UUUUAUCUUUAGUCCCGGUUGGGA   69 Target Full Sequence	2.5	Sequence 2046 from Patent EP2985353	NA	coding protein	psRNATarget
HI403921.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   =|==||||||||||||||||||** targets:46   UUUUAUCUUUAGUCCCGGUUGGGA   69 Target Full Sequence	2.5	Sequence 2046 from Patent EP2074227	NA	coding protein	psRNATarget
JB164382.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   =|==||||||||||||||||||** targets:46   UUUUAUCUUUAGUCCCGGUUGGGA   69 Target Full Sequence	2.5	Sequence 2046 from Patent EP2559767	NA	coding protein	psRNATarget
AK288377.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   **|*|||||||||||||||||||| targets:1373   AGCGAUCUUUAGUCCCGGUUGGUG   1396 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090026K06, full insert sequence	NA	coding protein	psRNATarget
AK288424.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   *|||||||||||*||||||||||* targets:1366   AUCCAUCUUUAGCCCCGGUUGGUA   1389 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK288424.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   **=*||||||||||||||||*||| targets:2378   AAUGAUCUUUAGUCCCGGUUAGUG   2401 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK288598.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   =*|*|||||||||||||||||||| targets:967   UACGAUCUUUAGUCCCGGUUGGUG   990 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090051P05, full insert sequence	NA	coding protein	psRNATarget
AK288598.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   *|**=*|||||||||||||||||* targets:940   GUGGGACUUUAGUCCCGGUUGGUA   963 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090051P05, full insert sequence	NA	coding protein	psRNATarget
XM_015790121.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   =|=*|||||||||||||||||||* targets:926   UUUAAUCUUUAGUCCCGGUUGGUA   949 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA4 (LOC107281518), transcript variant X2, mRNA	putative disease resistance protein RGA4(LOC107281518)	coding protein	psRNATarget
XM_015790121.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   **=*||||||||||||||||||** targets:970   GCUGAUCUUUAGUCCCGGUUGGAC   993 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA4 (LOC107281518), transcript variant X2, mRNA	putative disease resistance protein RGA4(LOC107281518)	coding protein	psRNATarget
AK289098.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   *|**|||||||||||||||||||| targets:144   AUAGAUCUUUAGUCCCGGUUGGUG   167 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK289098.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   *|**|||||||||||||||||||* targets:235   AUAGAUCUUUAGUCCCGGUUGGUA   258 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK289098.1	ncRNA:24   GAGG------UAGAAAUCAGGGCCAACCAC   1   ||||------|||||||*|||||||||||* targets:95   CUCCGCGUCGAUCUUUACUCCCGGUUGGUU   124 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   ****|||||||||||||||||||| targets:552   GAGGAUCUUUAGUCCCGGUUGGUG   575 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   |||--|||||||||=||||||||* targets:599   CUC--UCUUUAGUCUCGGUUGGUA   620 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
AK288734.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   =|=*|||||||||||||||||||* targets:44   UUUGAUCUUUAGUCCCGGUUGGUA   67 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090063I24, full insert sequence	NA	coding protein	psRNATarget
XM_015755884.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   **==|||||||||||||||||||* targets:1371   AAUUAUCUUUAGUCCCGGUUGGUA   1394 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group S-norcoclaurine synthase 1 (LOC4346830), mRNA	S-norcoclaurine synthase 1(LOC4346830)	coding protein	psRNATarget
AK121472.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   *||*|||||||||=|||||||||* targets:2057   AUCGAUCUUUAGUUCCGGUUGGUA   2080 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023148H10, full insert sequence	NA	coding protein	psRNATarget
AK061057.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   ****|||||||||||=|||||||| targets:304   GAGGAUCUUUAGUCCUGGUUGGUG   327 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:006-205-H07, full insert sequence	NA	coding protein	psRNATarget
XM_015758676.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   ****||||||=||||||||||||| targets:2020   GAAAAUCUUUGGUCCCGGUUGGUG   2043 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group polyubiquitin-like (LOC107279205), mRNA	polyubiquitin-like(LOC107279205)	coding protein	psRNATarget
AK065811.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   ||**|||||||||||||||||||* targets:1902   CUAAAUCUUUAGUCCCGGUUGGUA   1925 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013039F07, full insert sequence	NA	coding protein	psRNATarget
AK288438.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   ||**|||||||||||||||||||* targets:2360   CUAAAUCUUUAGUCCCGGUUGGUA   2383 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK288438.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   =|=*||||||||*||||||||||* targets:1308   UUUGAUCUUUAGCCCCGGUUGGUA   1331 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK288438.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   =**=|||||||||||||||||*|* targets:1419   UGGUAUCUUUAGUCCCGGUUGUUU   1442 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK121178.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   **|*|||||||||||||||||||* targets:1905   GACGAUCUUUAGUCCCGGUUGGUA   1928 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023083G22, full insert sequence	NA	coding protein	psRNATarget
JB164979.1	ncRNA:24   GAGG-----UAGAAAUCAGGGCCAACCAC   1   *|||-----||||||||*||||||||||| targets:35   AUCCCGGUGAUCUUUAGCCCCGGUUGGUG   63 Target Full Sequence	1.5	Sequence 2643 from Patent EP2559767	NA	coding protein	psRNATarget
HI404518.1	ncRNA:24   GAGG-----UAGAAAUCAGGGCCAACCAC   1   *|||-----||||||||*||||||||||| targets:35   AUCCCGGUGAUCUUUAGCCCCGGUUGGUG   63 Target Full Sequence	1.5	Sequence 2643 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236648.1	ncRNA:24   GAGG-----UAGAAAUCAGGGCCAACCAC   1   *|||-----||||||||*||||||||||| targets:35   AUCCCGGUGAUCUUUAGCCCCGGUUGGUG   63 Target Full Sequence	1.5	Sequence 2643 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015779829.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   ****|||||||||||||||||||* targets:1697   GAGGAUCUUUAGUCCCGGUUGGUA   1720 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
XM_015755256.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   **=*|||||||||||||||||||* targets:140   AAUGAUCUUUAGUCCCGGUUGGUA   163 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346665 (LOC4346665), transcript variant X2, mRNA	uncharacterized LOC4346665(LOC4346665)	coding protein	psRNATarget
AK288544.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   ||**|||||||||||||||||*|| targets:1786   CUAGAUCUUUAGUCCCGGUUGAUG   1809 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090046G24, full insert sequence	NA	coding protein	psRNATarget
AK288859.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   ***=|||||||||||||||||*|| targets:2235   AGAUAUCUUUAGUCCCGGUUGUUG   2258 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090076J15, full insert sequence	NA	coding protein	psRNATarget
XM_015755226.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   ****|||||||||||||||||*|| targets:67   GAGGAUCUUUAGUCCCGGUUGAUG   90 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278786 (LOC107278786), mRNA	uncharacterized LOC107278786(LOC107278786)	coding protein	psRNATarget
AK288191.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   =|=*|||||||||||||||||*|* targets:1559   UUUGAUCUUUAGUCCCGGUUGUUU   1582 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090007A11, full insert sequence	NA	coding protein	psRNATarget
AK288224.1	ncRNA:24   GAGG-UAGAAAUCAGGGCCAACCAC   1   |||*-|||||||||||||||||*|* targets:1256   CUCGGAUCUUUAGUCCCGGUUGAUA   1280 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090012B15, full insert sequence	NA	coding protein	psRNATarget
AK066662.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   *|*=||||||||||||||||*||* targets:652   AUGUAUCUUUAGUCCCGGUUCGUA   675 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013071A17, full insert sequence	NA	coding protein	psRNATarget
AK099726.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   *|*=|||||||||*|||||||||* targets:1089   AUAUAUCUUUAGUACCGGUUGGUA   1112 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013089E05, full insert sequence	NA	coding protein	psRNATarget
AK288405.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   =|=*|||*||||||||*||||||| targets:2385   UUUGAUCCUUAGUCCCCGUUGGUG   2408 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090030E11, full insert sequence	NA	coding protein	psRNATarget
HI404521.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   **=*|||||||||||||*|||||* targets:120   AAUGAUCUUUAGUCCCGAUUGGUA   143 Target Full Sequence	2.5	Sequence 2646 from Patent EP2074227	NA	coding protein	psRNATarget
JB164982.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   **=*|||||||||||||*|||||* targets:120   AAUGAUCUUUAGUCCCGAUUGGUA   143 Target Full Sequence	2.5	Sequence 2646 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236651.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   **=*|||||||||||||*|||||* targets:120   AAUGAUCUUUAGUCCCGAUUGGUA   143 Target Full Sequence	2.5	Sequence 2646 from Patent EP2985353	NA	coding protein	psRNATarget
AK288799.1	ncRNA:24   GAGGUAGAAAUCAGGGCCAACCAC   1   ****|*||||||||||*||||||| targets:3404   AAAAAACUUUAGUCCCAGUUGGUG   3427 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090070K11, full insert sequence	NA	coding protein	psRNATarget